Molecular computation: Molecular logic gets loaded

2005 ◽  
Vol 4 (1) ◽  
pp. 15-16 ◽  
Author(s):  
A. P. De Silva
Author(s):  
Angshuman Bagchi

The present chapter deals with the topic Molecular Computation. The chapter first defines the basic terminologies associated with the processes. The chapter discusses the basic molecular biology and DNA and membranes. Emphases are given on the structural arrangements of DNA and the molecular architecture of biological membranes. The chapter also focuses on the molecular logic behind the applications of DNA and bimolecular membranes in computations. There are discussions on the current researches that are going on in the field of DNA and membrane computations. There are comparative analyses of the existing computational techniques with molecular computations. There are very few reports that deal with the underlying basics of molecular computation techniques. Thus the chapter may be a first hand guide for researchers interested in the field. The chapter is written for the benefits of both the biologists as well as computer scientists.


2015 ◽  
Vol 185 ◽  
pp. 337-346 ◽  
Author(s):  
Jue Ling ◽  
Gaowa Naren ◽  
Jessica Kelly ◽  
Adam Qureshi ◽  
A. Prasanna de Silva

Molecular logic-based computation continues to throw up new applications in sensing and switching, the newest of which is the edge detection of objects. The scope of this phenomenon is mapped out by the use of structure–activity relationships, where several structures of the molecules and of the objects are examined. The different angles and curvatures of the objects are followed with good fidelity in the visualized edges, even when the objects are in reverse video.


2019 ◽  
Author(s):  
Adam Eördögh ◽  
Carolina Paganini ◽  
Dorothea Pinotsi ◽  
Paolo Arosio ◽  
Pablo Rivera-Fuentes

<div>Photoactivatable dyes enable single-molecule imaging in biology. Despite progress in the development of new fluorophores and labeling strategies, many cellular compartments remain difficult to image beyond the limit of diffraction in living cells. For example, lipid droplets, which are organelles that contain mostly neutral lipids, have eluded single-molecule imaging. To visualize these challenging subcellular targets, it is necessary to develop new fluorescent molecular devices beyond simple on/off switches. Here, we report a fluorogenic molecular logic gate that can be used to image single molecules associated with lipid droplets with excellent specificity. This probe requires the subsequent action of light, a lipophilic environment and a competent nucleophile to produce a fluorescent product. The combination of these requirements results in a probe that can be used to image the boundary of lipid droplets in three dimensions with resolutions beyond the limit of diffraction. Moreover, this probe enables single-molecule tracking of lipids within and between droplets in living cells.</div>


Author(s):  
Amilra Prasanna de Silva ◽  
Matthew West ◽  
Chao-Yi Yao ◽  
Gavin Melaugh ◽  
Kyoko Kawamoto ◽  
...  

Polymers ◽  
2019 ◽  
Vol 11 (8) ◽  
pp. 1351 ◽  
Author(s):  
Chao-Yi Yao ◽  
Seiichi Uchiyama ◽  
A. Prasanna de Silva

Our experiences concerning fluorescent molecular sensing and logic devices and their intersections with polymer science are the foci of this brief review. Proton-, metal ion- and polarity-responsive cases of these devices are placed in polymeric micro- or nano-environments, some of which involve phase separation. This leads to mapping of chemical species on the nanoscale. These devices also take advantage of thermal properties of some polymers in water in order to reincarnate themselves as thermometers. When the phase separation leads to particles, the latter can be labelled with identification tags based on molecular logic. Such particles also give rise to reusable sensors, although molecular-scale resolution is sacrificed in the process. Polymeric nano-environments also help to organize rather complex molecular logic systems from their simple components. Overall, our little experiences suggest that researchers in sensing and logic would benefit if they assimilate polymer concepts.


2005 ◽  
Vol 1 ◽  
pp. 1744-8069-1-16 ◽  
Author(s):  
David D McKemy

Recognition of temperature is a critical element of sensory perception and allows us to evaluate both our external and internal environments. In vertebrates, the somatosensory system can discriminate discrete changes in ambient temperature, which activate nerve endings of primary afferent fibers. These thermosensitive nerves can be further segregated into those that detect either innocuous or noxious (painful) temperatures; the latter neurons being nociceptors. We now know that thermosensitive afferents express ion channels of the transient receptor potential (TRP) family that respond at distinct temperature thresholds, thus establishing the molecular basis for thermosensation. Much is known of those channels mediating the perception of noxious heat; however, those proposed to be involved in cool to noxious cold sensation, TRPM8 and TRPA1, have only recently been described. The former channel is a receptor for menthol, and links the sensations provided by this and other cooling compounds to temperature perception. While TRPM8 almost certainly performs a critical role in cold signaling, its part in nociception is still at issue. The latter channel, TRPA1, is activated by the pungent ingredients in mustard and cinnamon, but has also been postulated to mediate our perception of noxious cold temperatures. However, a number of conflicting reports have suggested that the role of this channel in cold sensation needs to be confirmed. Thus, the molecular logic for the perception of cold-evoked pain remains enigmatic. This review is intended to summarize our current understanding of these cold thermoreceptors, as well as address the current controversy regarding TRPA1 and cold signaling.


Science ◽  
1995 ◽  
Vol 270 (5241) ◽  
pp. 1510-1510 ◽  
Author(s):  
W. P. C. Stemmer

2017 ◽  
Vol 29 (8) ◽  
pp. 561-574 ◽  
Author(s):  
Srikala Pangannaya ◽  
Arshiya Kaur ◽  
Makesh Mohan ◽  
Keyur Raval ◽  
Dillip Kumar Chand ◽  
...  

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