scholarly journals Single-cell measurement of ammonium and bicarbonate uptake within a photosymbiotic bioeroding sponge

2018 ◽  
Vol 12 (5) ◽  
pp. 1308-1318 ◽  
Author(s):  
Michelle Achlatis ◽  
Mathieu Pernice ◽  
Kathryn Green ◽  
Paul Guagliardo ◽  
Matthew R Kilburn ◽  
...  
Micromachines ◽  
2021 ◽  
Vol 12 (6) ◽  
pp. 631
Author(s):  
Kiran Kaladharan ◽  
Ashish Kumar ◽  
Pallavi Gupta ◽  
Kavitha Illath ◽  
Tuhin Subhra Santra ◽  
...  

The ability to deliver foreign molecules into a single living cell with high transfection efficiency and high cell viability is of great interest in cell biology for applications in therapeutic development, diagnostics, and drug delivery towards personalized medicine. Various physical delivery methods have long demonstrated the ability to deliver cargo molecules directly to the cytoplasm or nucleus and the mechanisms underlying most of the approaches have been extensively investigated. However, most of these techniques are bulk approaches that are cell-specific and have low throughput delivery. In comparison to bulk measurements, single-cell measurement technologies can provide a better understanding of the interactions among molecules, organelles, cells, and the microenvironment, which can aid in the development of therapeutics and diagnostic tools. To elucidate distinct responses during cell genetic modification, methods to achieve transfection at the single-cell level are of great interest. In recent years, single-cell technologies have become increasingly robust and accessible, although limitations exist. This review article aims to cover various microfluidic-based physical methods for single-cell intracellular delivery such as electroporation, mechanoporation, microinjection, sonoporation, optoporation, magnetoporation, and thermoporation and their analysis. The mechanisms of various physical methods, their applications, limitations, and prospects are also elaborated.


2020 ◽  
Vol 117 (46) ◽  
pp. 28784-28794
Author(s):  
Sisi Chen ◽  
Paul Rivaud ◽  
Jong H. Park ◽  
Tiffany Tsou ◽  
Emeric Charles ◽  
...  

Single-cell measurement techniques can now probe gene expression in heterogeneous cell populations from the human body across a range of environmental and physiological conditions. However, new mathematical and computational methods are required to represent and analyze gene-expression changes that occur in complex mixtures of single cells as they respond to signals, drugs, or disease states. Here, we introduce a mathematical modeling platform, PopAlign, that automatically identifies subpopulations of cells within a heterogeneous mixture and tracks gene-expression and cell-abundance changes across subpopulations by constructing and comparing probabilistic models. Probabilistic models provide a low-error, compressed representation of single-cell data that enables efficient large-scale computations. We apply PopAlign to analyze the impact of 40 different immunomodulatory compounds on a heterogeneous population of donor-derived human immune cells as well as patient-specific disease signatures in multiple myeloma. PopAlign scales to comparisons involving tens to hundreds of samples, enabling large-scale studies of natural and engineered cell populations as they respond to drugs, signals, or physiological change.


2015 ◽  
Vol 43 (16) ◽  
pp. e104-e104 ◽  
Author(s):  
Richard Novak ◽  
Kristina Hart ◽  
Richard A. Mathies
Keyword(s):  

Author(s):  
Hirotaka Sugiura ◽  
Shinya Sakuma ◽  
Makoto Kaneko ◽  
Fumihito Arai

Microbiology ◽  
2010 ◽  
Vol 156 (8) ◽  
pp. 2294-2304 ◽  
Author(s):  
Prahathees Eswaramoorthy ◽  
Jeffrey Dinh ◽  
Daniel Duan ◽  
Oleg A. Igoshin ◽  
Masaya Fujita

Upon nutrient starvation, the Gram-positive bacterium Bacillus subtilis switches from growth to sporulation by activating a multicomponent phosphorelay consisting of a major sensor histidine kinase (KinA), two phosphotransferases (Spo0F and Spo0B) and a response regulator (Spo0A). Although the primary sporulation signal(s) produced under starvation conditions is not known, it is believed that the reception of a signal(s) on the sensor kinase results in the activation of autophosphorylation of the enzyme. The phosphorylated kinase transfers the phosphate group to Spo0A via the phosphorelay and thus triggers sporulation. With a combination of quantitative immunoblot analysis, microscopy imaging and computational analysis, here we found that each of the phosphorelay components tested increased gradually over the period of sporulation, and that Spo0F was expressed in a more heterogeneous pattern than KinA and Spo0B in a sporulating cell population. We determined molecule numbers and concentrations of each phosphorelay component under physiological sporulation conditions at the single-cell level. Based on these results, we suggest that successful entry into the sporulation state is manifested by a certain critical level of each phosphorelay component, and thus that only a subpopulation achieves a sufficient intracellular quorum of the phosphorelay components to activate Spo0A and proceed successfully to the entry into sporulation.


2007 ◽  
Vol 47 (supplement) ◽  
pp. S110
Author(s):  
Masayoshi Nakata ◽  
Ryota Iino ◽  
Kunihiko Nishino ◽  
Eiji Nikaido ◽  
Yoshimi Matsumoto ◽  
...  

The Analyst ◽  
2015 ◽  
Vol 140 (7) ◽  
pp. 2330-2335 ◽  
Author(s):  
L. E. Jamieson ◽  
A. Jaworska ◽  
J. Jiang ◽  
M. Baranska ◽  
D. J. Harrison ◽  
...  

In this paper we have presented the first example of multiplexing pH and redox responsive SERS nanosensors for intracellular live single cell measurement on a cell by cell basis.


2020 ◽  
Vol 2020 (0) ◽  
pp. OS08-07
Author(s):  
Hiromichi OBARA ◽  
Hitoshi INABE ◽  
Ryota SATO

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