scholarly journals Diesel2p mesoscope with dual independent scan engines for flexible capture of dynamics in distributed neural circuitry

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Che-Hang Yu ◽  
Jeffrey N. Stirman ◽  
Yiyi Yu ◽  
Riichiro Hira ◽  
Spencer L. Smith
Keyword(s):  
Adaptive Optics ◽  
Calcium Imaging ◽  
High Speed ◽  
Optical Design ◽  
Neural Circuitry ◽  
Brain Regions ◽  
Field Of View ◽  
Large Field ◽  
Two Photon ◽  
Subcellular Resolution

AbstractImaging the activity of neurons that are widely distributed across brain regions deep in scattering tissue at high speed remains challenging. Here, we introduce an open-source system with Dual Independent Enhanced Scan Engines for Large field-of-view Two-Photon imaging (Diesel2p). Combining optical design, adaptive optics, and temporal multiplexing, the system offers subcellular resolution over a large field-of-view of ~25 mm2, encompassing distances up to 7 mm, with independent scan engines. We demonstrate the flexibility and various use cases of this system for calcium imaging of neurons in the living brain.

scholarly journals Diesel2p mesoscope with dual independent scan engines for flexible capture of dynamics in distributed neural circuitry

2020 ◽  
Author(s):  
Che-Hang Yu ◽  
Jeffrey N. Stirman ◽  
Yiyi Yu ◽  
Riichiro Hira ◽  
Spencer L. Smith
Keyword(s):  
Adaptive Optics ◽  
Calcium Imaging ◽  
High Speed ◽  
Optical Design ◽  
Neural Circuitry ◽  
Brain Regions ◽  
Field Of View ◽  
Large Field ◽  
Two Photon ◽  
Subcellular Resolution

AbstractImaging the activity of neurons that are widely distributed across brain regions deep in scattering tissue at high speed remains challenging. Here, we introduce an open-source system with Dual Independent Enhanced Scan Engines for Large Field-of-view Two-Photon imaging (Diesel2p). Combining novel optical design, adaptive optics, and temporal multiplexing, the system offers subcellular resolution over a large field-of-view (∼ 25 mm2) with independent scan engines. We demonstrate the flexibility and various use cases of this system for calcium imaging of neurons in the living brain.

scholarly journals NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data

2017 ◽  
Author(s):  
Eftychios A. Pnevmatikakis ◽  
Andrea Giovannucci
Keyword(s):  
Calcium Imaging ◽  
Motion Correction ◽  
Rigid Motion ◽  
Motion Artifacts ◽  
Streaming Data ◽  
Field Of View ◽  
Large Field ◽  
Motion Field ◽  
Imaging Data ◽  
Two Photon

AbstractBackgroundMotion correction is a challenging pre-processing problem that arises early in the analysis pipeline of calcium imaging data sequences. The motion artifacts in two-photon microscopy recordings can be non-rigid, arising from the finite time of raster scanning and non-uniform deformations of the brain medium.New methodWe introduce an algorithm for fast Non-Rigid Motion Correction (NoRMCorre) based on template matching. NoRMCorre operates by splitting the field of view into overlapping spatial patches that are registered at a sub-pixel resolution for rigid translation against a continuously updated template. The estimated alignments are subsequently up-sampled to create a smooth motion field for each frame that can efficiently approximate non-rigid motion in a piecewise-rigid manner.Existing methodsExisting approaches either do not scale well in terms of computational performance or are targeted to motion artifacts arising from low speed scanning, whereas modern datasets with large field of view are more prone to non-rigid brain deformation issues.ResultsNoRMCorre can be run in an online mode resulting in comparable to or even faster than real time motion registration on streaming data. We evaluate the performance of the proposed method with simple yet intuitive metrics and compare against other non-rigid registration methods on two-photon calcium imaging datasets. Open source Matlab and Python code is also made available.ConclusionsThe proposed method and code provide valuable support to the community for solving large scale image registration problems in calcium imaging, especially when non-rigid deformations are present in the acquired data.

Intravital multiphoton microscopy of dynamic renal processes

2005 ◽  
Vol 288 (6) ◽  
pp. F1084-F1089 ◽  
Author(s):  
Bruce A. Molitoris ◽  
Ruben M. Sandoval
Keyword(s):  
Proximal Tubule ◽  
Multiphoton Microscopy ◽  
Field Of View ◽  
Glomerular Permeability ◽  
Structural Alterations ◽  
Two Photon Microscopy ◽  
Two Photon ◽  
Dynamic Events ◽  
Subcellular Resolution ◽  
Functioning Kidney

Recent advances in microscopy and optics, computer sciences, and the available fluorophores used to label molecules of interest have empowered investigators to utilize intravital two-photon microscopy to study the dynamic events within the functioning kidney. This emerging technique enables investigators to follow functional and structural alterations with subcellular resolution within the same field of view over seconds to weeks. This approach invigorates the validity of data and facilitates analysis and interpretation as trends are more readily determined when one is more closely monitoring indicative physiological parameters. Therefore, in this review we emphasize how specific approaches will enable studies into glomerular permeability, proximal tubule endocytosis, and microvascular function within the kidney. We attempt to show how visual data can be quantified, thus allowing enhanced understanding of the process under study. Finally, emphasis is given to the possible future opportunities of this technology and its present limitations.

Optical Design of Portable Non-Mydriatic Fundus Camera with Large Field of View

2017 ◽  
Vol 37 (9) ◽  
pp. 0922001
Author(s):  
王晓恒 Wang Xiaoheng ◽  
薛庆生 Xue Qingsheng
Keyword(s):  
Optical Design ◽  
Field Of View ◽  
Large Field ◽  
Fundus Camera

Optimal phase reconstruction in large field of view: application to multiconjugate adaptive optics systems

2000 ◽  
Author(s):  
Thierry Fusco ◽  
Jean-Marc Conan ◽  
Vincent Michau ◽  
Laurent M. Mugnier ◽  
Gerard Rousset
Keyword(s):  
Adaptive Optics ◽  
Field Of View ◽  
Large Field ◽  
Phase Reconstruction

Adaptive optics for in vivo two-photon calcium imaging of neuronal networks

2014 ◽  
Author(s):  
Serge Meimon ◽  
Jean-Marc Conan ◽  
Laurent M. Mugnier ◽  
Vincent Michau ◽  
Rosa Cossart ◽  
...  
Keyword(s):  
Adaptive Optics ◽  
Calcium Imaging ◽  
Neuronal Networks ◽  
Two Photon

Multiconjugate adaptive optics: comparison of phase reconstruction approaches for large field of view

2001 ◽  
Author(s):  
Thierry Fusco ◽  
Jean-Marc Conan ◽  
Vincent Michau ◽  
Gerard Rousset ◽  
F. Assemat
Keyword(s):  
Adaptive Optics ◽  
Field Of View ◽  
Large Field ◽  
Phase Reconstruction
Sign in / Sign up

Export Citation Format

Share Document