Locked nucleic acid (LNA) induced effect on the hybridization and fluorescence properties of oligodeoxyribonucleotides modified with nucleobase-functionalized DNA monomers

2015 ◽  
Vol 13 (26) ◽  
pp. 7236-7247 ◽  
Author(s):  
Mamta Kaura ◽  
Patrick J. Hrdlicka
Keyword(s):  
Nucleic Acid ◽  
Single Nucleotide Polymorphisms ◽  
Locked Nucleic Acid ◽  
Fluorescence Properties ◽  
Nucleotide Polymorphisms ◽  
Single Nucleotide

Mixmer oligonucleotides modified with LNA and C5-pyrene-functionalized DNA monomers are shown to display interesting fluorescence properties for the discrimination of single nucleotide polymorphisms (SNPs).

scholarly journals A Locked Nucleic Acid Probe Based on Selective Salt-Induced Effect Detects Single Nucleotide Polymorphisms

2015 ◽  
Vol 2015 ◽  
pp. 1-6
Author(s):  
Jing Zhang ◽  
Huizhe Wu ◽  
Qiuchen Chen ◽  
Pengfei Zhao ◽  
Haishan Zhao ◽  
...  
Keyword(s):  
Nucleic Acid ◽  
Single Nucleotide Polymorphisms ◽  
Room Temperature ◽  
Genetic Mutation ◽  
Locked Nucleic Acid ◽  
Nucleotide Polymorphisms ◽  
Buffer Solution ◽  
Single Nucleotide ◽  
Real Time Quantitative Pcr ◽  
Pcr Products

Detection of single based genetic mutation by using oligonucleotide probes is one of the common methods of detecting single nucleotide polymorphisms at known loci. In this paper, we demonstrated a hybridization system which included a buffer solution that produced selective salt-induced effect and a locked nucleic acid modified 12 nt oligonucleotide probe. The hybridization system is suitable for hybridization under room temperature. By using magnetic nanoparticles as carriers for PCR products, the SNPs (MDR1C3435T/A) from 45 volunteers were analyzed, and the results were consistent with the results from pyrophosphoric acid sequencing. The method presented in this paper differs from the traditional method of using molecular beacons to detect SNPs in that it is suitable for research institutions lacking real-time quantitative PCR detecting systems, to detect PCR products at room temperature.

Fluorescence detection of single nucleotide polymorphisms using nucleic acid probe containing tricyclic base-linked acyclonucleoside

2012 ◽  
Vol 22 (1) ◽  
pp. 253-257 ◽  
Author(s):  
Mayumi Hattori ◽  
Tokimitsu Ohki ◽  
Emiko Yanase ◽  
Yoshihito Ueno
Keyword(s):  
Nucleic Acid ◽  
Single Nucleotide Polymorphisms ◽  
Fluorescence Detection ◽  
Nucleotide Polymorphisms ◽  
Single Nucleotide

Improved single nucleotide polymorphisms detection using conjugated polymer/surfactant system and peptide nucleic acid

2008 ◽  
Vol 23 (10) ◽  
pp. 1466-1472 ◽  
Author(s):  
Hameed A. Al Attar ◽  
Jean Norden ◽  
Stephen O’Brien ◽  
Andy P. Monkman
Keyword(s):  
Nucleic Acid ◽  
Single Nucleotide Polymorphisms ◽  
Conjugated Polymer ◽  
Peptide Nucleic Acid ◽  
Nucleotide Polymorphisms ◽  
Single Nucleotide ◽  
Surfactant System ◽  
Polymer Surfactant

Multiplex Mass Spectrometric Genotyping of Single Nucleotide Polymorphisms Employing Pyrrolidinyl Peptide Nucleic Acid in Combination with Ion-Exchange Capture

2008 ◽  
Vol 80 (21) ◽  
pp. 8178-8186 ◽  
Author(s):  
Boonjira Boontha ◽  
Jeerawat Nakkuntod ◽  
Nattiya Hirankarn ◽  
Piyasak Chaumpluk ◽  
Tirayut Vilaivan
Keyword(s):  
Nucleic Acid ◽  
Ion Exchange ◽  
Single Nucleotide Polymorphisms ◽  
Peptide Nucleic Acid ◽  
Mass Spectrometric ◽  
Nucleotide Polymorphisms ◽  
Single Nucleotide

Combination of peptide nucleic acid beacon and nuclease S1 for clear-cut genotyping of single nucleotide polymorphisms

2007 ◽  
Vol 363 (2) ◽  
pp. 300-302 ◽  
Author(s):  
Sheng Ye ◽  
Yoshitaka Miyajima ◽  
Toshiyuki Ohnishi ◽  
Yoji Yamamoto ◽  
Makoto Komiyama
Keyword(s):  
Nucleic Acid ◽  
Single Nucleotide Polymorphisms ◽  
Peptide Nucleic Acid ◽  
Nucleotide Polymorphisms ◽  
Single Nucleotide ◽  
Clear Cut ◽  
Nuclease S1

scholarly journals Peptide Nucleic Acid-Assisted Label-free Detection of Single-Nucleotide Polymorphisms Based on Light Scattering of Carbon Nanotubes

ACS Omega ◽  
2018 ◽  
Vol 3 (12) ◽  
pp. 17835-17841 ◽  
Author(s):  
Wanxing Xu ◽  
Shu Xing ◽  
Xiaojun Xu ◽  
Mengjia Xu ◽  
Pan Fu ◽  
...  
Keyword(s):  
Carbon Nanotubes ◽  
Light Scattering ◽  
Nucleic Acid ◽  
Single Nucleotide Polymorphisms ◽  
Peptide Nucleic Acid ◽  
Nucleotide Polymorphisms ◽  
Label Free ◽  
Single Nucleotide ◽  
Label Free Detection
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