Identification of a major intermediate along the self-assembly pathway of an icosahedral viral capsid by using an analytical model of a spherical patch

Soft Matter ◽  
2016 ◽  
Vol 12 (32) ◽  
pp. 6728-6736 ◽  
Author(s):  
Didier Law-Hine ◽  
Mehdi Zeghal ◽  
Stéphane Bressanelli ◽  
Doru Constantin ◽  
Guillaume Tresset
2017 ◽  
Vol 56 (20) ◽  
pp. 12652-12663 ◽  
Author(s):  
Shumpei Kai ◽  
Yui Sakuma ◽  
Takako Mashiko ◽  
Tatsuo Kojima ◽  
Masanori Tachikawa ◽  
...  

2020 ◽  
Author(s):  
Yuyang Miao ◽  
Shibo Lv ◽  
Daoyuan Zheng ◽  
Yuhan Liu ◽  
Dapeng Liu ◽  
...  

Abstract Porphyrin-based metal coordination polymers (MCPs) have attracted numerous attention due to their great promise application in phototherapy including photodynamic therapy (PDT) and photothermal therapy (PTT). However, the detailed self-assembly process of porphyrin-based MCPs still remains poorly understood. This work provides a detailed study of the self-assembly process of MCPs constructed by Mn2+ and TCPP (TCPP: 4,4′,4′′,4′′′-(Porphine-5,10,15,20-tetrayl)tetrakis(benzoic acid)) in aqueous solution. Unlike traditional nucleation and growth mechanism, we discover that there is a metastable metal-organic intermediate which is kinetically favored in the self-assembly process. And the metastable metal-organic intermediate nanotape structures could convert into thermodynamically favored nanosheets through disassembling into monomers followed by reassembling process. Moreover, the two structurally different assemblies exhibit distinct photophysical performances. The intermediate Mn-TCPP aggregates show good light-induced singlet oxygen 1O2 generation for PDT while the thermodynamic favored stable Mn-TCPP aggregates exhibit good photothermal conversion ability as photothermal agents (PTAs). This study could facilitate controlling self-assembly pathway to fabricate complex MCPs with desirable applications.


1996 ◽  
Vol 2 (11) ◽  
pp. 1395-1398 ◽  
Author(s):  
Annie Marquis-Rigault ◽  
Annick Dupont-Gervais ◽  
Alain Van Dorsselaer ◽  
Jean-Marie Lehn

2014 ◽  
Vol 30 (1) ◽  
pp. 141-150 ◽  
Author(s):  
Vidyalakshmi Chockalingam Muthukumar ◽  
Leebyn Chong ◽  
Meenakshi Dutt

Abstract


2010 ◽  
Vol 132 (12) ◽  
pp. 4230-4241 ◽  
Author(s):  
Emilie Pouget ◽  
Nicolas Fay ◽  
Erik Dujardin ◽  
Nadège Jamin ◽  
Patrick Berthault ◽  
...  

2019 ◽  
Vol 20 (23) ◽  
pp. 5966 ◽  
Author(s):  
Armando Díaz-Valle ◽  
José Marcos Falcón-González ◽  
Mauricio Carrillo-Tripp

The viral capsid is a macromolecular complex formed by a defined number of self-assembled proteins, which, in many cases, are biopolymers with an identical amino acid sequence. Specific protein–protein interactions (PPI) drive the capsid self-assembly process, leading to several distinct protein interfaces. Following the PPI hot spot hypothesis, we present a conservation-based methodology to identify those interface residues hypothesized to be crucial elements on the self-assembly and thermodynamic stability of the capsid. We validate the predictions through a rigorous physical framework which integrates molecular dynamics simulations and free energy calculations by Umbrella sampling and the potential of mean force using an all-atom molecular representation of the capsid proteins of an icosahedral virus in an explicit solvent. Our results show that a single mutation in any of the structure-conserved hot spots significantly perturbs the quaternary protein–protein interaction, decreasing the absolute value of the binding free energy, without altering the protein’s secondary nor tertiary structure. Our conservation-based hot spot prediction methodology can lead to strategies to rationally modulate the capsid’s thermodynamic properties.


2015 ◽  
Vol 51 (58) ◽  
pp. 11634-11637 ◽  
Author(s):  
Emerson Rodrigo da Silva ◽  
Wendel Andrade Alves ◽  
Valeria Castelletto ◽  
Mehedi Reza ◽  
Janne Ruokolainen ◽  
...  

The self-assembly of peptide nanotubes formed by an l-glutamic acid-based bolaamphiphile is shown to proceed via a remarkable mechanism where the peptide conformation changes from β-sheet to unordered.


2021 ◽  
Author(s):  
Yuyang Miao ◽  
Shibo Lv ◽  
Daoyuan Zheng ◽  
Yuhan Liu ◽  
Dapeng Liu ◽  
...  

During the self-assembly process of porphyrin-based metal coordination polymers, two different nanoaggregates were discovered. The nanoaggregates exhibited pathway-dependent properties and showed different applications in phototherapy.


2018 ◽  
Vol 47 (10) ◽  
pp. 3258-3263 ◽  
Author(s):  
Shumpei Kai ◽  
Sai Prakash Maddala ◽  
Tatsuo Kojima ◽  
Shota Akagi ◽  
Koji Harano ◽  
...  

The self-assembly of a Pd2L4 cage from flexible ditopic ligands and Pd(ii) ions takes place through the transient formation of submicrometre-sized sheet structures.


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