scholarly journals A combined crystallographic and theoretical study of weak intermolecular interactions in crystalline squaric acid esters and amides

CrystEngComm ◽  
2017 ◽  
Vol 19 (22) ◽  
pp. 3071-3077 ◽  
Author(s):  
Rafel Prohens ◽  
Anna Portell ◽  
Mercè Font-Bardia ◽  
Antonio Bauzá ◽  
Antonio Frontera
2016 ◽  
Vol 18 (42) ◽  
pp. 29249-29257 ◽  
Author(s):  
Chengqian Yuan ◽  
Haiming Wu ◽  
Meiye Jia ◽  
Peifeng Su ◽  
Zhixun Luo ◽  
...  

Utilizing dispersion-corrected density functional theory (DFT) calculations, we demonstrate the weak intermolecular interactions of phenylenediamine dimer (pdd) clusters, emphasizing the local lowest energy structures and decomposition of interaction energies by natural bond orbital (NBO) and atoms in molecule (AIM) analyses.


CrystEngComm ◽  
2016 ◽  
Vol 18 (34) ◽  
pp. 6437-6443 ◽  
Author(s):  
Rafel Prohens ◽  
Anna Portell ◽  
Mercè Font-Bardia ◽  
Antonio Bauzá ◽  
Antonio Frontera

2019 ◽  
Vol 75 (10) ◽  
pp. 1424-1433
Author(s):  
Banafsheh Vahdani Alviri ◽  
Mehrdad Pourayoubi ◽  
Abolghasem Farhadipour ◽  
Manpreet Kaur ◽  
Jerry P. Jasinski

The asymmetric unit of O,O′-dimethyl [(2,3,4,5,6-pentafluorophenyl)hydrazinyl]phosphonate, C8H8F5N2O3P, is composed of two symmetry-independent molecules with significant differences in the orientations of the C6F5 and OMe groups. In the crystal structure, a one-dimensional assembly is mediated from classical N—H...O hydrogen bonds, which includes R 2 2(8), D(2) and some higher-order graph-set motifs. By also considering weak C—H...O=P and C—H...O—C intermolecular interactions, a two-dimensional network extends along the ab plane. The strengths of the hydrogen bonds were evaluated using quantum chemical calculations with the GAUSSIAN09 software package at the B3LYP/6-311G(d,p) level of theory. The LP(O) to σ*(NH) and σ*(CH) charge-transfer interactions were examined according to second-order perturbation theory in natural bond orbital (NBO) methodology. The hydrogen-bonded clusters of molecules, including N—H...O and C—H...O interactions, were constructed as input files for the calculations and the strengths of the hydrogen bonds are as follows: N—H...O [R 2 2(8)] > N—H...O [D(2)] > C—H...O. The decomposed fingerprint plots show that the contribution portions of the F...H/H...F contacts in both molecules are the largest.


2021 ◽  
Author(s):  
Wilmer Esteban Vallejo Narváez ◽  
Cesar Gabriel Vera de la Garza ◽  
Luis Daniel Solís Rodríguez ◽  
Serguei Fomine

Abstract Complexes of Li, Na and Mg with graphene, silicene, phosphorene nanoflakes (NFs) and their 2D allotropies have been studied at dispersion corrected TPSS/def-TZVP level of theory. The energy partition analysis of the complexes revealed that for most of the complexes exchange and correlation energies represent dominant contributions to the binding with strong charge transfer from metal atom to a NF. The exceptions are Mg complexes of graphene and phosphorene NFs where binding is due to dispersion and correlation terms. This difference is also reflected in large Mg-NF distances suggesting weak intermolecular interactions in these complexes. The calculated activation energies for metal hopping are easily achievable at room temperatures for carbon and silicon allotropies. However, they are significantly higher for phosphorus allotropies reaching almost 18 kcal/mol. There is a reasonably good correlation between the activation energies for hopping and binding energies for graphene, silicene and phosphorene NFs. Such correlation is not observed however for graphene, silicene and phosphorene 2D allotropies


2021 ◽  
Vol 57 (3) ◽  
pp. 266-273
Author(s):  
Kyrill Yu. Suponitsky ◽  
Aleksei A. Anisimov ◽  
Ivan V. Ananyev ◽  
Alexander A. Lashakov ◽  
Svetlana V. Osintseva ◽  
...  

2014 ◽  
Vol 14 (7) ◽  
pp. 3499-3509 ◽  
Author(s):  
Marta Pérez-Torralba ◽  
M. Ángeles García ◽  
Concepción López ◽  
M. Carmen Torralba ◽  
M. Rosario Torres ◽  
...  

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