Locality and nonlocality of electronic structures of molecular systems: Toward QM/MM and QM/QM approaches

Author(s):  
Shusuke Yamanaka ◽  
Yasushige Yonezawa ◽  
Kazuto Nakata ◽  
Satomichi Nishihara ◽  
Mitsutaka Okumura ◽  
...  
Atoms ◽  
2019 ◽  
Vol 7 (3) ◽  
pp. 70 ◽  
Author(s):  
Jen-Hao Ou ◽  
Yew Kam Ho

Knowledge of the electronic structures of atomic and molecular systems deepens our understanding of the desired system. In particular, several information-theoretic quantities, such as Shannon entropy, have been applied to quantify the extent of electron delocalization for the ground state of various systems. To explore excited states, we calculated Shannon entropy and two of its one-parameter generalizations, Rényi entropy of order α and Tsallis entropy of order α , and Onicescu Information Energy of order α for four low-lying singly excited states (1s2s 1 S e , 1s2s 3 S e , 1s3s 1 S e , and 1s3s 3 S e states) of helium. This paper compares the behavior of these three quantities of order 0.5 to 9 for the ground and four excited states. We found that, generally, a higher excited state had a larger Rényi entropy, larger Tsallis entropy, and smaller Onicescu information energy. However, this trend was not definite and the singlet–triplet reversal occurred for Rényi entropy, Tsallis entropy and Onicescu information energy at a certain range of order α .


1976 ◽  
Vol 54 (6) ◽  
pp. 949-962 ◽  
Author(s):  
Myung-Hwan Whangbo ◽  
Saul Wolfe

A procedure is proposed which allows the group orbitals of a fragment AHm—to be obtained from the molecular orbitals of the molecule AHm—H. Orbital interaction diagrams constructed from these group orbitals have been found useful in the description of the electronic structures and conformations of a variety of molecular systems of the type AHmBHn. The molecules that have been treated by this procedure include ethane, hydrazine, diphosphine, aminophosphine, aminoborane, and sulfonium and phosphonium ylids.


Pteridines ◽  
2015 ◽  
Vol 26 (4) ◽  
pp. 135-142 ◽  
Author(s):  
Gilbert Reibnegger

AbstractThe electronic structures of the five radicals resulting from homolytic elimination of one of the hydrogen atoms from the most stable tautomeric form of neutral pterin were investigated in gas phase as well as in aqueous solution. Molecular wave functions obtained by density functional theory were analysed by quantum theory of atoms in molecules and electron localisation functions (ELF). Spin densities of the radicals as well as electrostatic potential functions were analysed. Radicals resulting from elimination of N-bonded hydrogen atoms are more stable in comparison with radicals obtained after abstraction of C-bonded hydrogen atoms. N-centred radicals show strong delocalisation of spin density over both heteroaromatic rings; in C-centred radicals delocalisation does not occur. ELF analyses showed that in N-derived radicals particularly the lone electron pair at N2′ is strongly involved into the bicyclic heteroaromatic π-electron system. Thereby, bonding geometry at N2′ in these radicals changes from pyramidal to planar. Transition from gas phase to solution phase (water) generally leads to increased polarity of the structures. Pterin-derived free radicals have been implicated in several biologically important reactions; so this investigation provides first insights into the detailed electronic structures of such molecular systems.


2020 ◽  
Vol 2 (4) ◽  
Author(s):  
Behnam Nikoobakht ◽  
◽  
Gulzari L. Malli ◽  
Martin Siegert

In this work, we study the single and double ionization spectra of the M(CO)6,with M =( W and Cr ) complexes by applying the four-component algebraic diagrammatic construction and Fock-space coupled cluster methods to extend earlier studies based on less demanding approaches. The computed single and double ionization potentials are in good agreement comparing with the available experimental results. The electronic structures of the cationic molecular systems are carefully investigated by computing accurately single and double ionization potentials. The final state characterization is relied on group theoretical considerations of the contributing orbitals and allowed for a clear assignment. Energy level diagrams show the effect of spin-orbit (SO) coupling starting from scalar relativistic results and for the heavy representative M(CO)6 with M =( W and Cr ) nonadditivity effects of the SO and electron correlation can be observed requiring a consistent treatment of both contributions.


Author(s):  
Dawn A. Bonnell ◽  
Yong Liang

Recent progress in the application of scanning tunneling microscopy (STM) and tunneling spectroscopy (STS) to oxide surfaces has allowed issues of image formation mechanism and spatial resolution limitations to be addressed. As the STM analyses of oxide surfaces continues, it is becoming clear that the geometric and electronic structures of these surfaces are intrinsically complex. Since STM requires conductivity, the oxides in question are transition metal oxides that accommodate aliovalent dopants or nonstoichiometry to produce mobile carriers. To date, considerable effort has been directed toward probing the structures and reactivities of ZnO polar and nonpolar surfaces, TiO2 (110) and (001) surfaces and the SrTiO3 (001) surface, with a view towards integrating these results with the vast amount of previous surface analysis (LEED and photoemission) to build a more complete understanding of these surfaces. However, the spatial localization of the STM/STS provides a level of detail that leads to conclusions somewhat different from those made earlier.


1997 ◽  
Vol 90 (4) ◽  
pp. 599-609 ◽  
Author(s):  
NAĐA DOSLIC ◽  
S.DANKO BOSANAC

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