scholarly journals Use of Photoaffinity Labeling and Site-directed Mutagenesis for Identification of the Key Residue Responsible for Extraordinarily High Affinity Binding of UCN-01 in Human α1-Acid Glycoprotein

2004 ◽  
Vol 280 (2) ◽  
pp. 1384-1391 ◽  
Author(s):  
Masaaki Katsuki ◽  
Victor Tuan Giam Chuang ◽  
Koji Nishi ◽  
Kohichi Kawahara ◽  
Hitoshi Nakayama ◽  
...  
Blood ◽  
2004 ◽  
Vol 103 (6) ◽  
pp. 2114-2120 ◽  
Author(s):  
Hu Peng ◽  
Abha Sahni ◽  
Philip Fay ◽  
Stephen Bellum ◽  
Igor Prudovsky ◽  
...  

Abstract Endothelial cell adhesive interactions are mediated by both fibrinogen and fibrin, and growth is stimulated by fibroblast growth factor 2 (FGF-2). We have shown previously that FGF-2 binds specifically and with high affinity to fibrinogen and fibrin and that fibrinogen potentiates the proliferative capacity of FGF-2 and also protects it from proteolytic degradation. To further characterize this interaction we have performed FGF-2 mutagenesis to identify the interactive site. Because FGF-1 has a similar structure to FGF-2 but does not bind to fibrinogen, we used a strategy of cassette and site-directed mutagenesis, exchanging residues from FGF-1 and FGF-2 and correlating structural changes with fibrinogen binding. Two cassette interchange mutants, 2212 and 2211, contained either the third cassette or both the third and fourth cassettes from FGF-1, and neither exhibited any affinity for fibrinogen. Exchange of 5 residues (Phe95, Ser100, Asn102, Arg107, and Arg109) from FGF-2 into the corresponding sites in the third cassette of FGF-1 imparted high-affinity binding with apparent dissociation constants (Kd) of 5.3 nM and 8.6 nM, respectively, compared with 1.3 nM for wild-type FGF-2. We conclude that these 5 residues define a high-affinity binding site in FGF-2 for fibrinogen.


2003 ◽  
Vol 300 (1) ◽  
pp. 41-46 ◽  
Author(s):  
Vladimı́r Kopecký ◽  
Rüdiger Ettrich ◽  
Kateřina Hofbauerová ◽  
Vladimı́r Baumruk

2021 ◽  
pp. 101392
Author(s):  
Erik J.B. Landin ◽  
Christopher Williams ◽  
Sara A. Ryan ◽  
Alice Bochel ◽  
Nahida Akter ◽  
...  

Pharmacology ◽  
1997 ◽  
Vol 54 (5) ◽  
pp. 271-275 ◽  
Author(s):  
Didier Morin ◽  
Nicolas Simon ◽  
Petra Deprés-Brummer ◽  
Francis Lévi ◽  
Jean-Paul Tillement ◽  
...  

1980 ◽  
Vol 13 (03) ◽  
pp. 144-145 ◽  
Author(s):  
J. Schley ◽  
M. Nündel ◽  
M. Siegert ◽  
E. Riedel ◽  
B. Müller-Oerlinghausen

2000 ◽  
Vol 74 (6) ◽  
pp. 2804-2813 ◽  
Author(s):  
Ian Kirby ◽  
Elizabeth Davison ◽  
Andrew J. Beavil ◽  
Cecilia P. C. Soh ◽  
Thomas J. Wickham ◽  
...  

ABSTRACT The binding of adenovirus (Ad) fiber knob to its cellular receptor, the coxsackievirus and Ad receptor (CAR), promotes virus attachment to cells and is a major determinant of Ad tropism. Analysis of the kinetics of binding of Ad type 5 (Ad5) fiber knob to the soluble extracellular domains of CAR together (sCAR) and each immunoglobulin (Ig) domain (IgV and IgC2) independently by surface plasmon resonance demonstrated that the IgV domain is necessary and sufficient for binding, and no additional membrane components are required to confer high-affinity binding to Ad5 fiber knob. Four Ad5 fiber knob mutations, Ser408Glu and Pro409Lys in the AB loop, Tyr477Ala in the DG loop, and Leu485Lys in β strand F, effectively abolished high-affinity binding to CAR, while Ala406Lys and Arg412Asp in the AB loop and Arg481Glu in β strand E significantly reduced the level of binding. Circular dichroism spectroscopy showed that these mutations do not disorder the secondary structure of the protein, implicating Ser408, Pro409, Tyr477, and Leu485 as contact residues, with Ala406, Arg412, and Arg481 being peripherally or indirectly involved in CAR binding. The critical residues have exposed side chains that form a patch on the surface, which thus defines the high-affinity interface for CAR. Additional site-directed mutagenesis of Ad5 fiber knob suggests that the binding site does not extend to the adjacent subunit or toward the edge of the R sheet. These findings have implications for our understanding of the biology of Ad infection, the development of novel Ad vectors for targeted gene therapy, and the construction of peptide inhibitors of Ad infection.


2016 ◽  
Vol 473 (10) ◽  
pp. 1369-1378 ◽  
Author(s):  
Nikita Malkov ◽  
Judith Fliegmann ◽  
Charles Rosenberg ◽  
Virginie Gasciolli ◽  
Antonius C.J. Timmers ◽  
...  

LYR3 [LysM (lysin motif) receptor-like kinase 3] of Medicago truncatula is a high-affinity binding protein for symbiotic LCO (lipo-chitooligosaccharide) signals, produced by rhizobia bacteria and arbuscular mycorrhizal fungi. The present study shows that LYR3 from several other legumes, but not from two Lupinus species which are incapable of forming the mycorrhizal symbiosis, bind LCOs with high affinity and discriminate them from COs (chitooligosaccharides). The biodiversity of these proteins and the lack of binding to the Lupinus proteins were used to identify features required for high-affinity LCO binding. Swapping experiments between each of the three LysMs of the extracellular domain of the M. truncatula and Lupinus angustifolius LYR3 proteins revealed the crucial role of the third LysM in LCO binding. Site-directed mutagenesis identified a tyrosine residue, highly conserved in all LYR3 LCO-binding proteins, which is essential for high-affinity binding. Molecular modelling suggests that it may be part of a hydrophobic tunnel able to accommodate the LCO acyl chain. The lack of conservation of these features in the binding site of plant LysM proteins binding COs provides a mechanistic explanation of how LCO recognition might differ from CO perception by structurally related LysM receptors.


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