scholarly journals Molecular genetic variability of Juglans regia L. and Juglans sigillata D. as revealed by fluorescent amplified-fragment length polymorphism

2020 ◽  
Vol 34 (1) ◽  
pp. 725-731
Author(s):  
Qing-guo Ma ◽  
Jun-pei Zhang ◽  
Dong Pei
2012 ◽  
Vol 5 (2) ◽  
pp. 187-194 ◽  
Author(s):  
G. Martins Reis ◽  
L. de Oliveira Rocha ◽  
D. Diniz Atayde ◽  
M.J. Moreira Batatinha ◽  
B. Corrêa

Brazil contributes substantially to the global peanut production, and the state of São Paulo is the largest producer in the country. Peanut crops can be contaminated by Aspergillus flavus strains producing aflatoxins, which are highly toxic and carcinogenic. Thus, the production of high-quality peanuts is crucial both for the commercial peanut industry and as a matter of public health. In this study, we used amplified fragment length polymorphism analysis (AFLP) to investigate the genetic variability among A. flavus strains isolated from fresh peanuts harvested in four different regions in the state of São Paulo, and to determine whether the molecular genetic profiles correlated with aflatoxin production or sclerotia formation. AFLP analysis generated 78 fragments ranging from 27 to 365 base pairs in length. Thirteen percent were not polymorphic. Genotyping identified twelve groups of A. flavus. On the basis of the polymorphisms identified, similarity between the isolates ranged from 37% to 100%. Of all isolates collected, 91.7% produced aflatoxins and 83.9% produced small sclerotia. Statistical analysis failed to suggest any relationship between the presence of sclerotia and mean levels of aflatoxins B1 and B2. Furthermore, a dendrogram based on AFLP data revealed substantial genetic variability among the A. flavus strains, but showed no correlation between dendrogram groups separated by molecular genetic features and production of aflatoxins B1 or B2 or the formation of sclerotia.


2015 ◽  
Vol 338 (12) ◽  
pp. 838-845 ◽  
Author(s):  
Swapnil Mahadeo Patil ◽  
Vishal Vinayak Chandanshive ◽  
Asif Shabodin Tamboli ◽  
Avinash Asraji Adsul ◽  
Shrirang Ramchandra Yadav ◽  
...  

2009 ◽  
Vol 134 (1) ◽  
pp. 58-66 ◽  
Author(s):  
Yeun-Kyung Chang ◽  
Richard E. Veilleux ◽  
Muhammad Javed Iqbal

Phalaenopsis is the second most valuable potted plant in the United States. Information on the genetic diversity and relationships among species and hybrids is important for breeding purposes and species conservation. In this study, genetic variability of 16 Phalaenopsis species and hybrids was analyzed using amplified fragment length polymorphism (AFLP) markers. Ten AFLP primer combinations amplified 1353 DNA fragments ranging in size from 100 to 350 bp and 1285 (95%) of them were polymorphic. The genetic similarity among Phalaenopsis species and hybrids ranged from 0.298 to 0.774 based on Dice coefficient. The dendrogram derived by the unweighted pair group method with arithmetic mean analysis clustered the germplasm into two main groups. Bootstrap values for the groups supported 70% of the clustering. A significant linear relationship (r = 0.724, P < 0.0001) was observed between known pedigrees and AFLP-derived genetic similarity for 136 pairwise comparisons of Phalaenopsis species and hybrids. The results of this study demonstrate the usefulness of AFLP analysis in Phalaenopsis and its potential application in breeding and species conservation.


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