scholarly journals An application of a relational database system for high-throughput prediction of elemental compositions from accurate mass values

2012 ◽  
Vol 29 (2) ◽  
pp. 290-291 ◽  
Author(s):  
Nozomu Sakurai ◽  
Takeshi Ara ◽  
Shigehiko Kanaya ◽  
Yukiko Nakamura ◽  
Yoko Iijima ◽  
...  
2015 ◽  
Vol 2015 ◽  
pp. 1-7 ◽  
Author(s):  
Rodrigo Aniceto ◽  
Rene Xavier ◽  
Valeria Guimarães ◽  
Fernanda Hondo ◽  
Maristela Holanda ◽  
...  

Rapid advances in high-throughput sequencing techniques have created interesting computational challenges in bioinformatics. One of them refers to management of massive amounts of data generated by automatic sequencers. We need to deal with the persistency of genomic data, particularly storing and analyzing these large-scale processed data. To find an alternative to the frequently considered relational database model becomes a compelling task. Other data models may be more effective when dealing with a very large amount of nonconventional data, especially for writing and retrieving operations. In this paper, we discuss the Cassandra NoSQL database approach for storing genomic data. We perform an analysis of persistency and I/O operations with real data, using the Cassandra database system. We also compare the results obtained with a classical relational database system and another NoSQL database approach, MongoDB.


1996 ◽  
Vol 8 (3) ◽  
pp. 160-168 ◽  
Author(s):  
Janet Burt ◽  
Tom Beaumont James

This article discusses the different approaches to the treatment of historical databases: the relational database system and κλειω, a source-oriented approach.


2020 ◽  
Vol 63 (8) ◽  
pp. 93-101
Author(s):  
Shangyu Luo ◽  
Zekai J. Gao ◽  
Michael Gubanov ◽  
Luis L. Perez ◽  
Dimitrije Jankov ◽  
...  

1991 ◽  
Vol 20 (3) ◽  
pp. 62-72 ◽  
Author(s):  
Tina M. Harvey ◽  
Craig W. Schnepf ◽  
Mark A. Roth

1987 ◽  
pp. 539-546
Author(s):  
Toshihisa Takagi ◽  
Fumihiro Matsuo ◽  
Shooichi Futamura ◽  
Kazuo Ushijima

2001 ◽  
Vol 6 (1-2) ◽  
pp. 100-109
Author(s):  
Sun Yong-qiang ◽  
Xu Shu-ting ◽  
Zhu Feng-hua ◽  
Lai Shu-hua

2004 ◽  
Vol 4 ◽  
pp. 442-448
Author(s):  
Wei Wei-Qi ◽  
Zhu Guang-Jin ◽  
Xu Cheng-Li ◽  
Han Shao-Mei ◽  
Qi Bao-Shen ◽  
...  

Physiology constants of adolescents are important to understand growing living systems and are a useful reference in clinical and epidemiological research. Until recently, physiology constants were not available in China and therefore most physiologists, physicians, and nutritionists had to use data from abroad for reference. However, the very difference between the Eastern and Western races casts doubt on the usefulness of overseas data. We have therefore created a database system to provide a repository for the storage of physiology constants of teen-agers in Beijing. The several thousands of pieces of data are now divided into hematological biochemistry, lung function, and cardiac function with all data manually checked before being transferred into the database. The database was accomplished through the development of a web interface, scripts, and a relational database. The physiology data were integrated into the relational database system to provide flexible facilities by using combinations of various terms and parameters. A web browser interface was designed for the users to facilitate their searching. The database is available on the web. The statistical table, scatter diagram, and histogram of the data are available for both anonym and user according to queries, while only the user can achieve detail, including download data and advanced search.


Sign in / Sign up

Export Citation Format

Share Document