GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks

Thomas Moerman; Sara Aibar Santos; Carmen Bravo González-Blas; Jaak Simm; Yves Moreau; Jan Aerts; Stein Aerts

doi:10.1093/bioinformatics/bty916

GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks

Bioinformatics ◽

10.1093/bioinformatics/bty916 ◽

2018 ◽

Vol 35 (12) ◽

pp. 2159-2161 ◽

Cited By ~ 39

Author(s):

Thomas Moerman ◽

Sara Aibar Santos ◽

Carmen Bravo González-Blas ◽

Jaak Simm ◽

Yves Moreau ◽

...

Keyword(s):

Gene Regulatory Networks ◽

Regulatory Networks ◽

Scalable Inference ◽

Gene Regulatory

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Scalable Inference of Gene Regulatory Networks with the Spark Distributed Computing Platform

Intelligent Distributed Computing XII - Studies in Computational Intelligence ◽

10.1007/978-3-319-99626-4_6 ◽

2018 ◽

pp. 61-70 ◽

Cited By ~ 1

Author(s):

Cristóbal Barba-González ◽

José García-Nieto ◽

Antonio Benítez-Hidalgo ◽

Antonio J. Nebro ◽

José F. Aldana-Montes

Keyword(s):

Distributed Computing ◽

Gene Regulatory Networks ◽

Regulatory Networks ◽

Computing Platform ◽

Scalable Inference ◽

Gene Regulatory ◽

Distributed Computing Platform

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Guaranteed Cost Control for Uncertain Gene Regulatory Networks with Interval Time-Varying Discrete Delays and Constant Distributed Delays

2020 39th Chinese Control Conference (CCC) ◽

10.23919/ccc50068.2020.9189156 ◽

2020 ◽

Author(s):

Zhiwei Zhang ◽

Heng Liu ◽

Xinyue Zhang ◽

Yantao Wang ◽

Xian Zhang

Keyword(s):

Gene Regulatory Networks ◽

Regulatory Networks ◽

Cost Control ◽

Guaranteed Cost Control ◽

Distributed Delays ◽

Time Varying ◽

Interval Time ◽

Guaranteed Cost ◽

Discrete Delays ◽

Gene Regulatory

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Gene regulatory networks

Physics Subject Headings (PhySH) ◽

10.29172/b42c75b9b89345c3bf012539026851d0 ◽

2018 ◽

Keyword(s):

Gene Regulatory Networks ◽

Regulatory Networks ◽

Gene Regulatory

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Faculty Opinions recommendation of A common set of gene regulatory networks links metabolism and growth inhibition.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1019244.254628 ◽

2004 ◽

Author(s):

Cheng-Ming Chiang

Keyword(s):

Growth Inhibition ◽

Gene Regulatory Networks ◽

Regulatory Networks ◽

Gene Regulatory

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Faculty Opinions recommendation of Evolution of evolvability in gene regulatory networks.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1118830.574921 ◽

2008 ◽

Author(s):

Panayiotis Benos

Keyword(s):

Gene Regulatory Networks ◽

Regulatory Networks ◽

Gene Regulatory

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Faculty Opinions recommendation of Comparing different ODE modelling approaches for gene regulatory networks.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1168106.630230 ◽

2009 ◽

Author(s):

Philip Maini ◽

Alexander Fletcher

Keyword(s):

Gene Regulatory Networks ◽

Regulatory Networks ◽

Gene Regulatory ◽

Modelling Approaches

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Faculty Opinions recommendation of How difficult is inference of mammalian causal gene regulatory networks?

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.725223355.793502741 ◽

2015 ◽

Author(s):

Mark Ragan

Keyword(s):

Gene Regulatory Networks ◽

Regulatory Networks ◽

Causal Gene ◽

Gene Regulatory

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Faculty Opinions recommendation of Specific functions of the Wnt signaling system in gene regulatory networks throughout the early sea urchin embryo.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.725231801.793514586 ◽

2016 ◽

Author(s):

David McClay

Keyword(s):

Wnt Signaling ◽

Sea Urchin ◽

Gene Regulatory Networks ◽

Regulatory Networks ◽

Signaling System ◽

Sea Urchin Embryo ◽

Gene Regulatory

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Faculty Opinions recommendation of Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.729074122.793536255 ◽

2017 ◽

Author(s):

Elena Alvarez-Buylla ◽

Monica Garcia

Keyword(s):

Gene Expression ◽

Stem Cells ◽

Gene Expression Data ◽

Gene Regulatory Networks ◽

Regulatory Networks ◽

Expression Data ◽

Arabidopsis Root ◽

Temporal Gene Expression ◽

Gene Regulatory

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Faculty Opinions recommendation of Computational prediction of gene regulatory networks in plant growth and development.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.734453736.793555784 ◽

2019 ◽

Author(s):

Andy Pereira

Keyword(s):

Plant Growth ◽

Gene Regulatory Networks ◽

Growth And Development ◽

Regulatory Networks ◽

Computational Prediction ◽

Plant Growth And Development ◽

Gene Regulatory

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