Shifts in short-chain fatty acid profile, Fe(III) reduction and bacterial community with biochar amendment in rice paddy soil

2020 ◽  
Vol 96 (4) ◽  
Author(s):  
Yue Lu ◽  
Leiling Fu ◽  
Lin Tang ◽  
Jing Zhang ◽  
Yanru Zhang ◽  
...  

ABSTRACT Biochar, a valuable product from the pyrolysis of agricultural and forestry residues, has been widely applied as soil amendment. However, the effect of different types of biochar on soil microorganisms and associated biochemical processes in paddy soil remains ambiguous. In this study, we investigated the impact of biochars derived from different feedstocks (rice straw, orange peel and bamboo powder) on the dynamics of short-chain fatty acids (SCFAs), iron concentration and bacterial community in paddy soil within 90 days of anaerobic incubation. Results showed that biochar amendment overall inhibited the accumulation of SCFAs while accelerating the Fe(III) reduction process in paddy soil. In addition, 16S rRNA gene sequencing results demonstrated that the α-diversity of the bacterial community significantly decreased in response to biochar amendments at day 1 but was relatively unaffected at the end of incubation, and incubation time was the major driver for the succession of the bacterial community. Furthermore, significant correlations between parameters (e.g. SCFAs and iron concentration) and bacterial taxa (e.g. Clostridia, Syntrophus, Syntrophobacter and Desulfatiglans) were observed. Overall, our findings demonstrated amendment with different types of biochar altered SCFA profile, Fe(III) reduction and bacterial biodiversity in rice paddy soil.

1999 ◽  
Vol 65 (11) ◽  
pp. 5050-5058 ◽  
Author(s):  
Ulf Hengstmann ◽  
Kuk-Jeong Chin ◽  
Peter H. Janssen ◽  
Werner Liesack

ABSTRACT We used both cultivation and direct recovery of bacterial 16S rRNA gene (rDNA) sequences to investigate the structure of the bacterial community in anoxic rice paddy soil. Isolation and phenotypic characterization of 19 saccharolytic and cellulolytic strains are described in the accompanying paper (K.-J. Chin, D. Hahn, U. Hengstmann, W. Liesack, and P. H. Janssen, Appl. Environ. Microbiol. 65:5042–5049, 1999). Here we describe the phylogenetic positions of these strains in relation to 57 environmental 16S rDNA clone sequences. Close matches between the two data sets were obtained for isolates from the culturable populations determined by the most-probable-number counting method to be large (3 × 107 to 2.5 × 108 cells per g [dry weight] of soil). This included matches with 16S rDNA similarity values greater than 98% within distinct lineages of the divisionVerrucomicrobia (strain PB90-1) and theCytophaga-Flavobacterium-Bacteroides group (strains XB45 and PB90-2), as well as matches with similarity values greater than 95% within distinct lines of descent of clostridial cluster XIVa (strain XB90) and the family Bacillaceae (strain SB45). In addition, close matches with similarity values greater than 95% were obtained for cloned 16S rDNA sequences and bacteria (strains DR1/8 and RPec1) isolated from the same type of rice paddy soil during previous investigations. The correspondence between culture methods and direct recovery of environmental 16S rDNA suggests that the isolates obtained are representative geno- and phenotypes of predominant bacterial groups which account for 5 to 52% of the total cells in the anoxic rice paddy soil. Furthermore, our findings clearly indicate that a dual approach results in a more objective view of the structural and functional composition of a soil bacterial community than either cultivation or direct recovery of 16S rDNA sequences alone.


2021 ◽  
Vol 274 ◽  
pp. 116573
Author(s):  
Danyan Chen ◽  
Yibo Zhou ◽  
Cong Xu ◽  
Xinyu Lu ◽  
Yang Liu ◽  
...  

2011 ◽  
Vol 48 (4) ◽  
pp. 435-442 ◽  
Author(s):  
Chang Hoon Lee ◽  
Sang Yoon Kim ◽  
Maria B. Villamil ◽  
Prabhat Pramanik ◽  
Chang Ok Hong ◽  
...  

Author(s):  
Makoto Kimura ◽  
Guanghua Wang ◽  
Natsuko Nakayama ◽  
Susumu Asakawa

2011 ◽  
Vol 92 (5) ◽  
pp. 1064-1072 ◽  
Author(s):  
Zhe Chen ◽  
Haijun Hou ◽  
Yan Zheng ◽  
Hongling Qin ◽  
Yijun Zhu ◽  
...  

Symbiosis ◽  
2017 ◽  
Vol 76 (1) ◽  
pp. 13-23 ◽  
Author(s):  
Mohammad Yaghoubi Khanghahi ◽  
Hemmatollah Pirdashti ◽  
Heshmatollah Rahimian ◽  
Ghorbanali Nematzadeh ◽  
Mehdi Ghajar Sepanlou

2013 ◽  
Vol 344 (2) ◽  
pp. 114-120 ◽  
Author(s):  
Nam Hyun Kim ◽  
Dong-Uk Kim ◽  
Ijung Kim ◽  
Jong-Ok Ka

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