Phylogenetic Diversity and Mycotoxin Potential of Emergent Phytopathogens within the Fusarium tricinctum Species Complex

Recent studies on multiple continents indicate members of the Fusarium tricinctum species complex (FTSC) are emerging as prevalent pathogens of small-grain cereals, pulses, and other economically important crops. These understudied fusaria produce structurally diverse mycotoxins, among which enniatins (ENNs) and moniliformin (MON) are the most frequent and of greatest concern to food and feed safety. Herein a large survey of fusaria in the Fusarium Research Center and Agricultural Research Service culture collections was undertaken to assess species diversity and mycotoxin potential within the FTSC. A 151-strain collection originating from diverse hosts and substrates from different agroclimatic regions throughout the world was selected from 460 FTSC strains to represent the breadth of FTSC phylogenetic diversity. Evolutionary relationships inferred from a 5-locus dataset, using maximum likelihood and parsimony, resolved the 151 strains as 24 phylogenetically distinct species, including nine that are new to science. Of the five genes analyzed, nearly full-length phosphate permease sequences contained the most phylogenetically informative characters, establishing its suitability for species-level phylogenetics within the FTSC. Fifteen of the species produced ENNs, MON, the sphingosine analog 2-amino-14,16- dimethyloctadecan-3-ol (AOD), and the toxic pigment aurofusarin (AUR) on a cracked corn kernel substrate. Interestingly, the five earliest diverging species in the FTSC phylogeny (i.e., F. iranicum, F. flocciferum, F. torulosum, Fusarium spp. FTSC 8 and 24) failed to produce AOD and MON, but synthesized ENNs and/or AUR. Moreover, our reassessment of nine published phylogenetic studies on the FTSC identified 11 additional novel taxa, suggesting this complex comprises at least 36 species.

Plant Functional and Phylogenetic Diversity Regulate Ecosystem Multifunctionality in Semi-Arid Grassland During Succession

The relationship between biodiversity and ecosystem multifunctionality (EMF) is crucial for understanding the processes of ecological restoration in semi-arid regions. However, partitioning the relative influence of various biodiversity attributes, namely taxonomic, functional, and phylogenetic diversity, on EMF during secondary succession is still unclear. This study aimed to bridge the gap by employing field measurements and the chronosequence approach at 21 plots with different stand ages and precipitation conditions on the Loess Plateau of China. For diversity indices, we calculated the Shannon–Wiener diversity index, Simpson’s dominance index, Pielou evenness index, community weighted mean (CWM), functional variance (FDvar), and Faith’s phylogenetic diversity (PD) based on the empirically measured composition and traits of plant species. The EMF was expressed as the averaged value of eight function variables (including aboveground biomass, root biomass, soil total carbon, total nitrogen, and total phosphorus content, soil organic carbon, available nitrogen and available phosphorus content). The results showed that species evenness and CWM of leaf dry matter content (LDMC) significantly increased yet the CWM of specific leaf area (SLA) decreased with stand age, indicating the resource-use strategy of the plants became more conservative through succession into its later stages. The EMF increased with both stand age and mean annual precipitation. The structural equation model revealed that stand age, soil water content (SWC), and the multiple diversity indices altogether accounted for 56.0% of the variation in the EMF. PD and the CWMs of plant height and LDMC had positive effects on the EMF, and the FDvar of leaf nitrogen had negative effects on EMF. However, the Shannon Wiener diversity had no significant effect on the EMF. Our results suggest that functional and phylogenetic diversity are more important than taxonomic diversity in predicting EMF, and that multidimensional biodiversity indices should be jointly considered to better predict EMF during the succession of semiarid grasslands.

Woody Encroachment Affects Multiple Dimensions of Ant Diversity in a Neotropical Savanna

Although savanna woody encroachment has become a global phenomenon, few studies have simultaneously evaluated its effects on multiple dimensions and levels of savanna biodiversity. We evaluated how the progressive increase in tree cover in a fire-suppressed savanna landscape affects the taxonomic, functional, and phylogenetic diversity of neotropical ant communities. We sampled ants along an extensive tree cover gradient, ranging from open savannas to forests established in former savanna areas due to fire suppression, and found that Leaf Area Index explained much of the observed variation in ant diversity at both the alpha and beta levels. However, ant responses to variation in tree cover were largely non-linear as differences in alpha diversity and in the dissimilarities of the sampled communities were often much more marked at the savanna/forest transition than at any other part of the gradient. The patterns of functional and phylogenetic diversity mirrored those of taxonomic diversity, notably at the beta level. At the alpha level, functional diversity tended to increase, whereas taxonomic and phylogenetic diversity decreased or was unrelated to tree cover. Our results indicate that savanna ant communities switch rapidly to an alternative state once savanna turns into forest. Ant communities in the newly formed forest areas lacked many of the species typical of the open habitats, suggesting that the maintenance of a fire suppression policy, is likely to result in a decrease in ant diversity and in the homogenization of the ant fauna at the landscape level.

Incongruent Spatial Distribution of Taxonomic, Phylogenetic, and Functional Diversity in Neotropical Cocosoid Palms

Biodiversity can be quantified by taxonomic, phylogenetic, and functional diversity. Current evidence points to a lack of congruence between the spatial distribution of these facets due to evolutionary and ecological constraints. A lack of congruence is especially evident between phylogenetic and taxonomic diversity since the name and number of species are an artificial, yet commonly used, way to measure biodiversity. Here we hypothesize that due to evolutionary constraints that link phylogenetic and functional diversity, areas with higher phylogenetic and functional diversity will be spatially congruent in Neotropical cocosoid palms, but neither will be congruent with areas of high taxonomic diversity. Also, we hypothesize that any congruent pattern differs between rainforests and seasonally dry forests, since these palms recently colonized and diversified in seasonally dry ecosystems. We use ecological niche modeling, a phylogenetic tree and a trait database to test the spatial congruence of the three facets of biodiversity. Taxonomic and phylogenetic diversity were negatively correlated. Phylogenetic and functional diversity were positively correlated, even though their spatial congruence was lower than expected at random. Taken together, our results suggest that studies focusing solely on large-scale patterns of taxonomic diversity are missing a wealth of information on diversification potential and ecosystem functioning.

Drought-induced Forest Dieback Increases Taxonomic and Functional Diversity But Not Phylogenetic Diversity of Saproxylic Beetles at Both Local and Landscape Scales

Context: Forest ecosystems worldwide are facing increasing drought-induced dieback, causing mortality patches across the landscape at multiple scales. This increases the supply of biological legacies and differentially affects forest insect communities.Objectives: We analysed the relative effects of local- and landscape-level dieback on local saproxylic beetle assemblages. We assessed how classic concepts in spatial ecology (e.g. habitat-amount and habitat-patch hypotheses) are involved in relationships between multi-scale spatial patterns of available resources and local communities.Methods: We sampled saproxylic beetle assemblages in commercial fir forests in the French highlands. Through automatic aerial mapping, we used dead tree crowns to assess dieback levels at several nested spatial scales. We analysed beetle taxonomic, phylogenetic and functional diversity related to differing levels of multi-scale dieback.Results: In line with the habitat-amount hypothesis, taxonomic and functional diversity, but not phylogenetic diversity, of beetle assemblages significantly benefitted from forest dieback, at both local and landscape scales. Very few single or interaction effects were detected in the multiplicative models combining local and landscape variables, though a significant positive effect of landscape-scale dieback on the abundance of cavity- and fungus-dwelling species was consistent with a spill-over effect. Increased landscape-scale dieback also caused a functional specialisation of beetle assemblages, favouring those related to large-diameter, well-decayed deadwood.Conclusions: Increasing tree mortality under benign neglect provides conservation benefits by heterogenising the forest landscape and enhancing deadwood habitats. Legacy retention practices could take advantage of unharvested, declining forest stands to promote species richness and functional diversity within conventionally managed forest landscapes.

Distribution, Function, and Evolution of a Gene Essential for Trichothecene Toxin Biosynthesis in Trichoderma

Trichothecenes are terpenoid toxins produced by species in 10 fungal genera, including species of Trichoderma. The trichothecene biosynthetic gene (tri) cluster typically includes the tri5 gene, which encodes a terpene synthase that catalyzes formation of trichodiene, the parent compound of all trichothecenes. The two Trichoderma species, Trichoderma arundinaceum and T. brevicompactum, that have been examined are unique in that tri5 is located outside the tri cluster in a genomic region that does not include other known tri genes. In the current study, analysis of 35 species representing a wide range of the phylogenetic diversity of Trichoderma revealed that 22 species had tri5, but only 13 species had both tri5 and the tri cluster. tri5 was not located in the cluster in any species. Using complementation analysis of a T. arundinaceum tri5 deletion mutant, we demonstrated that some tri5 homologs from species that lack a tri cluster are functional, but others are not. Phylogenetic analyses suggest that Trichoderma tri5 was under positive selection following its divergence from homologs in other fungi but before Trichoderma species began diverging from one another. We propose two models to explain these diverse observations. One model proposes that the location of tri5 outside the tri cluster resulted from loss of tri5 from the cluster in an ancestral species followed by reacquisition via horizontal transfer. The other model proposes that in species that have a functional tri5 but lack the tri cluster, trichodiene production provides a competitive advantage.