A novel method to assess data quality in large medical registries and databases

2019 ◽  
Vol 31 (7) ◽  
pp. 1-7 ◽  
Author(s):  
Andreas Perren ◽  
Bernard Cerutti ◽  
Mark Kaufmann ◽  
Hans Ulrich Rothen ◽  

Abstract Background There is no gold standard to assess data quality in large medical registries. Data auditing may be impeded by data protection regulations. Objective To explore the applicability and usefulness of funnel plots as a novel tool for data quality control in critical care registries. Method The Swiss ICU-Registry from all 77 certified adult Swiss ICUs (2014 and 2015) was subjected to quality assessment (completeness/accuracy). For the analysis of accuracy, a list of logical rules and cross-checks was developed. Type and number of errors (true coding errors or implausible data) were calculated for each ICU, along with noticeable error rates (>mean + 3 SD in the variable’s summary measure, or >99.8% CI in the respective funnel-plot). Results We investigated 164 415 patient records with 31 items each (37 items: trauma diagnosis). Data completeness was excellent; trauma was the only incomplete item in 1495 of 9871 records (0.1%, 0.0%–0.6% [median, IQR]). In 15 572 patients records (9.5%), we found 3121 coding errors and 31 265 implausible situations; the latter primarily due to non-specific information on patients’ provenance/diagnosis or supposed incoherence between diagnosis and treatments. Together, the error rate was 7.6% (5.9%–11%; median, IQR). Conclusions The Swiss ICU-Registry is almost complete and data quality seems to be adequate. We propose funnel plots as suitable, easy to implement instrument to assist in quality assurance of such a registry. Based on our analysis, specific feedback to ICUs with special-cause variation is possible and may promote such ICUs to improve the quality of their data.

Author(s):  
Antonella D. Pontoriero ◽  
Giovanna Nordio ◽  
Rubaida Easmin ◽  
Alessio Giacomel ◽  
Barbara Santangelo ◽  
...  

2021 ◽  
Vol 22 (S6) ◽  
Author(s):  
Yasmine Mansour ◽  
Annie Chateau ◽  
Anna-Sophie Fiston-Lavier

Abstract Background Meiotic recombination is a vital biological process playing an essential role in genome's structural and functional dynamics. Genomes exhibit highly various recombination profiles along chromosomes associated with several chromatin states. However, eu-heterochromatin boundaries are not available nor easily provided for non-model organisms, especially for newly sequenced ones. Hence, we miss accurate local recombination rates necessary to address evolutionary questions. Results Here, we propose an automated computational tool, based on the Marey maps method, allowing to identify heterochromatin boundaries along chromosomes and estimating local recombination rates. Our method, called BREC (heterochromatin Boundaries and RECombination rate estimates) is non-genome-specific, running even on non-model genomes as long as genetic and physical maps are available. BREC is based on pure statistics and is data-driven, implying that good input data quality remains a strong requirement. Therefore, a data pre-processing module (data quality control and cleaning) is provided. Experiments show that BREC handles different markers' density and distribution issues. Conclusions BREC's heterochromatin boundaries have been validated with cytological equivalents experimentally generated on the fruit fly Drosophila melanogaster genome, for which BREC returns congruent corresponding values. Also, BREC's recombination rates have been compared with previously reported estimates. Based on the promising results, we believe our tool has the potential to help bring data science into the service of genome biology and evolution. We introduce BREC within an R-package and a Shiny web-based user-friendly application yielding a fast, easy-to-use, and broadly accessible resource. The BREC R-package is available at the GitHub repository https://github.com/GenomeStructureOrganization.


2001 ◽  
Vol 27 (7) ◽  
pp. 867-876 ◽  
Author(s):  
Pankajakshan Thadathil ◽  
Aravind K Ghosh ◽  
J.S Sarupria ◽  
V.V Gopalakrishna

2014 ◽  
Vol 926-930 ◽  
pp. 4254-4257 ◽  
Author(s):  
Jin Xu ◽  
Da Tao Yu ◽  
Zhong Jie Yuan ◽  
Bo Li ◽  
Zi Zhou Xu

Traditional artificial perception quality control methods of marine environment monitoring data have many disadvantages, including high labor costs and mistakes of data review. Based on GIS spatial analysis technology, Marine Environment Monitoring Data Quality Control System is established according to the Bohai Sea monitoring regulation. In the practical application process, it plays the role of improving efficiency of quality control, saving the manpower and financial resources. It also provides an important guarantee for the comprehensive analysis and management of marine environment data.


1980 ◽  
Vol 1 (2) ◽  
pp. 171-172
Author(s):  
M.M. Koretz ◽  
M. Kohler ◽  
E. McGuigan ◽  
J.F. Hannigan ◽  
B.W. Brown

2008 ◽  
pp. 137-147 ◽  
Author(s):  
M. Hodkiewicz ◽  
P. Kelly ◽  
J. Sikorska ◽  
L. Gouws

2020 ◽  
Vol 27 (4) ◽  
Author(s):  
Daniel Michelson ◽  
Bjarne Hansen ◽  
Dominik Jacques ◽  
François Lemay ◽  
Peter Rodriguez

Sign in / Sign up

Export Citation Format

Share Document