scholarly journals Proteomic profiling and functional characterization of post-translational modifications of the fission yeast RNA exosome

2018 ◽  
Vol 46 (21) ◽  
pp. 11169-11183 ◽  
Author(s):  
Caroline Telekawa ◽  
François-Michel Boisvert ◽  
François Bachand
2015 ◽  
Vol 14 (8) ◽  
pp. 3292-3304 ◽  
Author(s):  
Ningning Liu ◽  
Yun Xiong ◽  
Yiran Ren ◽  
Linlin Zhang ◽  
Xianfei He ◽  
...  

PROTEOMICS ◽  
2011 ◽  
Vol 11 (14) ◽  
pp. 2911-2920 ◽  
Author(s):  
Guo-Ping Li ◽  
Hua Wang ◽  
Yiu-Kay Lai ◽  
Shao-Chun Chen ◽  
Marie C. M. Lin ◽  
...  

1997 ◽  
Vol 272 (43) ◽  
pp. 27116-27123 ◽  
Author(s):  
Jan-Willem H. P. van de Loo ◽  
John W. M. Creemers ◽  
Nicholas A. Bright ◽  
Bryan D. Young ◽  
Anton J. M. Roebroek ◽  
...  

2013 ◽  
Vol 15 (6) ◽  
pp. R180 ◽  
Author(s):  
John Wanner ◽  
Roopashree Subbaiah ◽  
Yelenna Skomorovska-Prokvolit ◽  
Yousef Shishani ◽  
Eric Boilard ◽  
...  

Genetics ◽  
2013 ◽  
Vol 194 (4) ◽  
pp. 873-884 ◽  
Author(s):  
Lianne Vachon ◽  
Justin Wood ◽  
Eun-Joo Gina Kwon ◽  
Amy Laderoute ◽  
Kate Chatfield-Reed ◽  
...  

2019 ◽  
Vol 12 (1) ◽  
Author(s):  
Wei-Chen Lin ◽  
Chia-Yun Tsai ◽  
Jian-Ming Huang ◽  
Shang-Rung Wu ◽  
Lichieh Julie Chu ◽  
...  

Abstract Background Pathogenic protozoans use extracellular vesicles (EVs) for intercellular communication and host manipulation. Acanthamoeba castellanii is a free-living protozoan that may cause severe keratitis and fatal granulomatous encephalitis. Although several secreted molecules have been shown to play crucial roles in the pathogenesis of Acanthamoeba, the functions and components of parasite-derived EVs are far from understood. Methods Purified EVs from A. castellanii were confirmed by electron microscopy and nanoparticle tracking analysis. The functional roles of parasite-derived EVs in the cytotoxicity to and immune response of host cells were examined. The protein composition in EVs from A. castellanii was identified and quantified by LC-MS/MS analysis. Results EVs from A. castellanii fused with rat glioma C6 cells. The parasite-derived EVs induced an immune response from human THP-1 cells and a cytotoxic effect in C6 cells. Quantitative proteomic analysis identified a total of 130 proteins in EVs. Among the identified proteins, hydrolases (50.2%) and oxidoreductases (31.7%) were the largest protein families in EVs. Furthermore, aminopeptidase activities were confirmed in EVs from A. castellanii. Conclusions The proteomic profiling and functional characterization of EVs from A. castellanii provide an in-depth understanding of the molecules packaged into EVs and their potential mechanisms mediating the pathogenesis of this parasite.


2021 ◽  
Vol 22 (2) ◽  
pp. 681
Author(s):  
Vaishnavi Amarr Reddy ◽  
Chunhong Li ◽  
Kumar Nadimuthu ◽  
Jessica Gambino Tjhang ◽  
In-Cheol Jang ◽  
...  

Production of a volatile phenylpropene; eugenol in sweet basil is mostly associated with peltate glandular trichomes (PGTs) found aerially. Currently only one eugenol synthase (EGS), ObEGS1 which belongs to PIP family is identified from sweet basil PGTs. Reports of the presence of eugenol in roots led us to analyse other EGSs in roots. We screened for all the PIP family reductase transcripts from the RNA-Seq data. In vivo functional characterization of all the genes in E. coli showed their ability to produce eugenol and were termed as ObEGS2-8. Among all, ObEGS1 displayed highest expression in PGTs and ObEGS4 in roots. Further, eugenol was produced only in the roots of soil-grown plants, but not in roots of aseptically-grown plants. Interestingly, eugenol production could be induced in roots of aseptically-grown plants under elicitation suggesting that eugenol production might occur as a result of environmental cues in roots. The presence of ObEGS4 transcript and protein in aseptically-grown plants indicated towards post-translational modifications (PTMs) of ObEGS4. Bioinformatics analysis showed possibility of phosphorylation in ObEGS4 which was further confirmed by in vitro experiment. Our study reveals the presence of multiple eugenol synthases in sweet basil and provides new insights into their diversity and tissue specific regulation.


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