scholarly journals Chloroplast DNA Haplotype Variation within and among Populations of Coreopsis grandiflora (Asteraceae)

1999 ◽  
Vol 77 (2) ◽  
pp. 305-311 ◽  
Author(s):  
J S Yates ◽  
J L Golden ◽  
J F Bain

Packera pseudaurea (Rydb.) Weber & Löve has previously been identified as a species containing an unusually high level of chloroplast DNA (cpDNA) polymorphism. Proposed sources of this intrapopulational variation have included hybridization and introgression, either ongoing or resulting from migrations associated with past glacial events. Restriction site analysis was performed on individuals from seven populations of P. pseudaurea from southern Alberta and adjacent Montana to assess variation more precisely. High levels of intrapopulational polymorphisms comprising a total of nine different haplotypes, only one apparently unique to the species, were detected in all but one southern population. The haplotypes separate into two groups upon phylogenetic analysis, a separation that corresponds to that detected in a wider sampling of Packera species. With one or two exceptions, the haplotypes of one group are also found in species based west of the Rocky Mountains. Those of the other are found in species based all over North America. These results lend support to the hypothesis that the variation in P. pseudaurea originated when the ranges of different Packera species were brought together by glaciation.Key words: Packera, cpDNA, phytogeography, haplotype variation, glaciation.


2000 ◽  
Vol 9 (8) ◽  
pp. 1113-1122 ◽  
Author(s):  
O. Raspé ◽  
P. Saumitou-Laprade ◽  
J. Cuguen ◽  
A.-L. Jacquemart

2012 ◽  
pp. n/a-n/a
Author(s):  
Changkyun Kim ◽  
Hong-Guang Zha ◽  
Tao Deng ◽  
Hang Sun ◽  
Su-Gong Wu

1991 ◽  
Vol 138 (1) ◽  
pp. 156-170 ◽  
Author(s):  
David B. Wagner ◽  
Zhong-Xu Sun ◽  
Diddahally R. Govindaraju ◽  
Bruce P. Dancik

Genetics ◽  
1994 ◽  
Vol 137 (3) ◽  
pp. 883-889 ◽  
Author(s):  
N T Miyashita ◽  
N Mori ◽  
K Tsunewaki

Abstract Restriction map variation in two 5-6-kb chloroplast DNA regions of five diploid Aegilops species in the section Sitopsis and two wild tetraploid wheats, Triticum dicoccoides and Triticum araraticum, was investigated with a battery of four-cutter restriction enzymes. A single accession each of Triticum durum, Triticum timopheevi and Triticum aestivum was included as a reference. More than 250 restriction sites were scored, of which only seven sites were found polymorphic in Aegilops speltoides. No restriction site polymorphisms were detected in all of the other diploid and tetraploid species. In addition, six insertion/deletion polymorphisms were detected, but they were mostly unique or species-specific. Estimated nucleotide diversity was 0.0006 for A. speltoides, and 0.0000 for all the other investigated species. In A. speltoides, none of Tajima's D values was significant, indicating no clear deviation from the neutrality of molecular polymorphisms. Significant non-random association was detected for three combinations out of 10 possible pairs between polymorphic restriction sites in A. speltoides. Phylogenetic relationship among all the plastotypes (plastid genotype) suggested the diphyletic origin of T. dicoccoides and T. araraticum. A plastotype of one A. speltoides accession was identical to the major type of T. araraticum (T. timopheevi inclusively). Three of the plastotypes found in the Sitopsis species are very similar, but not identical, to that of T. dicoccoides, T. durum and T. aestivum.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Wen-Wen Li ◽  
Li-Qiang Liu ◽  
Qiu-Ping Zhang ◽  
Wei-Quan Zhou ◽  
Guo-Quan Fan ◽  
...  

AbstractTo clarify the phytogeography of Prunus armeniaca L., two chloroplast DNA fragments (trnL-trnF and ycf1) and the nuclear ribosomal DNA internal transcribed spacer (ITS) were employed to assess genetic variation across 12 P. armeniaca populations. The results of cpDNA and ITS sequence data analysis showed a high the level of genetic diversity (cpDNA: HT = 0.499; ITS: HT = 0.876) and a low level of genetic differentiation (cpDNA: FST = 0.1628; ITS: FST = 0.0297) in P. armeniaca. Analysis of molecular variance (AMOVA) revealed that most of the genetic variation in P. armeniaca occurred among individuals within populations. The value of interpopulation differentiation (NST) was significantly higher than the number of substitution types (GST), indicating genealogical structure in P. armeniaca. P. armeniaca shared genotypes with related species and may be associated with them through continuous and extensive gene flow. The haplotypes/genotypes of cultivated apricot populations in Xinjiang, North China, and foreign apricot populations were mixed with large numbers of haplotypes/genotypes of wild apricot populations from the Ili River Valley. The wild apricot populations in the Ili River Valley contained the ancestral haplotypes/genotypes with the highest genetic diversity and were located in an area considered a potential glacial refugium for P. armeniaca. Since population expansion occurred 16.53 kyr ago, the area has provided a suitable climate for the population and protected the genetic diversity of P. armeniaca.


Author(s):  
Linhong Teng ◽  
Wentao Han ◽  
Xiao Fan ◽  
Xiaowen Zhang ◽  
Dong Xu ◽  
...  

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