Erratum: The splashback radius of optically selected clusters with Subaru HSC Second Public Data Release

AbstractThe tree of life is the fundamental biological roadmap for navigating the evolution and properties of life on Earth, and yet remains largely unknown. Even angiosperms (flowering plants) are fraught with data gaps, despite their critical role in sustaining terrestrial life. Today, high-throughput sequencing promises to significantly deepen our understanding of evolutionary relationships. Here, we describe a comprehensive phylogenomic platform for exploring the angiosperm tree of life, comprising a set of open tools and data based on the 353 nuclear genes targeted by the universal Angiosperms353 sequence capture probes. This paper (i) documents our methods, (ii) describes our first data release and (iii) presents a novel open data portal, the Kew Tree of Life Explorer (https://treeoflife.kew.org). We aim to generate novel target sequence capture data for all genera of flowering plants, exploiting natural history collections such as herbarium specimens, and augment it with mined public data. Our first data release, described here, is the most extensive nuclear phylogenomic dataset for angiosperms to date, comprising 3,099 samples validated by DNA barcode and phylogenetic tests, representing all 64 orders, 404 families (96%) and 2,333 genera (17%). Using the multi-species coalescent, we inferred a “first pass” angiosperm tree of life from the data, which totalled 824,878 sequences, 489,086,049 base pairs, and 532,260 alignment columns. The tree is strongly supported and highly congruent with existing taxonomy, while challenging numerous hypothesized relationships among orders and placing many genera for the first time. The validated dataset, species tree and all intermediates are openly accessible via the Kew Tree of Life Explorer. This major milestone towards a complete tree of life for all flowering plant species opens doors to a highly integrated future for angiosperm phylogenomics through the systematic sequencing of standardised nuclear markers. Our approach has the potential to serve as a much-needed bridge between the growing movement to sequence the genomes of all life on Earth and the vast phylogenomic potential of the world’s natural history collections.

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Analysis of the H.E.S.S. public data release with ctools

Astronomy and Astrophysics ◽

10.1051/0004-6361/201936010 ◽

2019 ◽

Vol 632 ◽

pp. A102

Author(s):

J. Knödlseder ◽

L. Tibaldo ◽

D. Tiziani ◽

A. Specovius ◽

J. Cardenzana ◽

...

Keyword(s):

Crab Nebula ◽

Real Data ◽

Joint Analysis ◽

Background Rate ◽

Cherenkov Telescopes ◽

Analysis Methods ◽

Public Data ◽

Data Release ◽

Open Source Software Package ◽

The Crab Nebula

The ctools open-source software package was developed for the scientific analysis of astronomical data from Imaging Air Cherenkov Telescopes (IACTs), such as H.E.S.S., VERITAS, MAGIC, and the future Cherenkov Telescope Array (CTA). To date, the software has been mainly tested using simulated CTA data; however, upon the public release of a small set of H.E.S.S. observations of the Crab nebula, MSH 15–52, RX J1713.7–3946, and PKS 2155–304 validation using real data is now possible. We analysed the data of the H.E.S.S. public data release using ctools version 1.6 and compared our results to those published by the H.E.S.S. Collaboration for the respective sources. We developed a parametric background model that satisfactorily describes the expected background rate as a function of reconstructed energy and direction for each observation. We used that model, and tested all analysis methods that are supported by ctools, including novel unbinned and joint or stacked binned analyses of the measured event energies and reconstructed directions, and classical On-Off analysis methods that are comparable to those used by the H.E.S.S. Collaboration. For all analysis methods, we found a good agreement between the ctools results and the H.E.S.S. Collaboration publications considering that they are not always directly comparable due to differences in the datatsets and event processing software. We also performed a joint analysis of H.E.S.S. and Fermi-LAT data of the Crab nebula, illustrating the multi-wavelength capacity of ctools. The joint Crab nebula spectrum is compatible with published literature values within the systematic uncertainties. We conclude that the ctools software is mature for the analysis of data from existing IACTs, as well as from the upcoming CTA.

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Stellar velocity dispersions and emission line properties of SDSS-III/BOSS galaxies

Proceedings of the International Astronomical Union ◽

10.1017/s174392131300450x ◽

2012 ◽

Vol 8 (S295) ◽

pp. 129-132

Author(s):

D. Thomas ◽

O. Steele ◽

C. Maraston ◽

J. Johansson ◽

A. Beifiori ◽

...

Keyword(s):

Emission Line ◽

Velocity Dispersion ◽

Target Selection ◽

Emission Lines ◽

Clear Correlation ◽

Data Set ◽

Star Forming ◽

Public Data ◽

Data Release ◽

Stellar Velocity

AbstractWe perform a spectroscopic analysis of 492,450 galaxy spectra from the first two years of observations of the Sloan Digital Sky Survey-III/Baryonic Oscillation Spectroscopic Survey (BOSS) collaboration. This data set has been released in the ninth SDSS data release, the first public data release of BOSS spectra. We show that the typical signal-to-noise ratio of BOSS spectra is sufficient to measure stellar velocity dispersion and emission line fluxes for individual objects. The typical velocity dispersion of a BOSS galaxy is 240 km/s, with an accuracy of better than 30 per cent for 93 per cent of BOSS galaxies. The distribution in velocity dispersion is redshift independent between redshifts 0.15 and 0.7, which reflects the survey design targeting massive galaxies with an approximately uniform mass distribution in this redshift interval. The majority of BOSS galaxies lack detectable emission lines. We analyse the emission line properties and present diagnostic diagrams using the emission lines [OII], Hβ, [OIII], Halpha, and [NII] (detected in about 4 per cent of the galaxies). We show that the emission line properties are strongly redshift dependent and that there is a clear correlation between observed frame colours and emission line properties. Within in the low-z sample around 0.15 < z < 0.3, half of the emission-line galaxies have LINER-like emission line ratios, followed by Seyfert-AGN dominated spectra, and only a small fraction of a few per cent are purely star forming galaxies. AGN and LINER-like objects, instead, are less prevalent in the high-z sample around 0.4 < z < 0.7, where more than half of the emission line objects are star forming. This is a pure selection effect caused by the non-detection of weak Hβ emission lines in the BOSS spectra. Finally, we show that star forming, AGN and emission line free galaxies are well separated in the g - r vs r - i target selection diagram.

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The fourth data release of the Kilo-Degree Survey: ugri imaging and nine-band optical-IR photometry over 1000 square degrees

Astronomy and Astrophysics ◽

10.1051/0004-6361/201834918 ◽

2019 ◽

Vol 625 ◽

pp. A2 ◽

Cited By ~ 33

Author(s):

K. Kuijken ◽

C. Heymans ◽

A. Dvornik ◽

H. Hildebrandt ◽

J. T. A. de Jong ◽

...

Keyword(s):

Gravitational Lensing ◽

Large Scale ◽

Optical Data ◽

Wide Field ◽

Photometric Redshifts ◽

Public Data ◽

Data Release ◽

The Mean ◽

Ir Photometry ◽

Field Imaging

Context. The Kilo-Degree Survey (KiDS) is an ongoing optical wide-field imaging survey with the OmegaCAM camera at the VLT Survey Telescope, specifically designed for measuring weak gravitational lensing by galaxies and large-scale structure. When completed it will consist of 1350 square degrees imaged in four filters (ugri). Aims. Here we present the fourth public data release which more than doubles the area of sky covered by data release 3. We also include aperture-matched ZYJHKs photometry from our partner VIKING survey on the VISTA telescope in the photometry catalogue. We illustrate the data quality and describe the catalogue content. Methods. Two dedicated pipelines are used for the production of the optical data. The ASTRO-WISE information system is used for the production of co-added images in the four survey bands, while a separate reduction of the r-band images using the THELI pipeline is used to provide a source catalogue suitable for the core weak lensing science case. All data have been re-reduced for this data release using the latest versions of the pipelines. The VIKING photometry is obtained as forced photometry on the THELI sources, using a re-reduction of the VIKING data that starts from the VISTA pawprints. Modifications to the pipelines with respect to earlier releases are described in detail. The photometry is calibrated to the Gaia DR2 G band using stellar locus regression. Results. In this data release a total of 1006 square-degree survey tiles with stacked ugri images are made available, accompanied by weight maps, masks, and single-band source lists. We also provide a multi-band catalogue based on r-band detections, including homogenized photometry and photometric redshifts, for the whole dataset. Mean limiting magnitudes (5σ in a 2″ aperture) and the tile-to-tile rms scatter are 24.23 ± 0.12, 25.12 ± 0.14, 25.02 ± 0.13, 23.68 ± 0.27 in ugri, respectively, and the mean r-band seeing is 0.″70.

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