Weighted-support vector machines for predicting membrane protein types based on pseudo-amino acid composition

An Ensemble Classifier of Support Vector Machines Used to Predict Protein Structural Classes by Fusing Auto Covariance and Pseudo-Amino Acid Composition

The Protein Journal ◽

10.1007/s10930-009-9222-z ◽

2010 ◽

Vol 29 (1) ◽

pp. 62-67 ◽

Cited By ~ 15

Author(s):

Jiang Wu ◽

Meng-Long Li ◽

Le-Zheng Yu ◽

Chao Wang

Keyword(s):

Amino Acid ◽

Support Vector Machines ◽

Amino Acid Composition ◽

Acid Composition ◽

Ensemble Classifier ◽

Support Vector ◽

Vector Machines ◽

Auto Covariance ◽

Structural Classes

Pseudo amino acid composition and multi-class support vector machines approach for conotoxin superfamily classification

10.1016/j.jtbi.2006.06.014 ◽

2006 ◽

Vol 243 (2) ◽

pp. 252-260 ◽

Cited By ~ 91

Author(s):

Sukanta Mondal ◽

Rajasekaran Bhavna ◽

Rajasekaran Mohan Babu ◽

Suryanarayanarao Ramakumar

Keyword(s):

Amino Acid ◽

Support Vector Machines ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Prediction of protein subcellular localization by support vector machines using multi-scale energy and pseudo amino acid composition

Amino Acids ◽

10.1007/s00726-006-0475-y ◽

2007 ◽

Vol 33 (1) ◽

pp. 69-74 ◽

Cited By ~ 96

Author(s):

J.-Y. Shi ◽

S.-W. Zhang ◽

Q. Pan ◽

Y.-M. Cheng ◽

J. Xie

Keyword(s):

Amino Acid ◽

Support Vector Machines ◽

Subcellular Localization ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Protein Subcellular Localization ◽

Multi Scale ◽

Prediction of Apoptosis Protein Locations with Genetic Algorithms and Support Vector Machines Through a New Mode of Pseudo Amino Acid Composition

Protein and Peptide Letters ◽

10.2174/0929866511009011473 ◽

2010 ◽

Vol 17 (12) ◽

pp. 1473-1479 ◽

Cited By ~ 49

Author(s):

Krishna Kumar Kandaswamy ◽

Ganesan Pugalenthi ◽

Steffen Moller ◽

Enno Hartmann ◽

Kai Uwe Kalies ◽

...

Keyword(s):

Genetic Algorithms ◽

Amino Acid ◽

Support Vector Machines ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Apoptosis Protein ◽

Using pseudo amino acid composition and binary-tree support vector machines to predict protein structural classes

Amino Acids ◽

10.1007/s00726-007-0496-1 ◽

2007 ◽

Vol 33 (4) ◽

pp. 623-629 ◽

Cited By ~ 81

Author(s):

T.-L. Zhang ◽

Y.-S. Ding

Keyword(s):

Amino Acid ◽

Support Vector Machines ◽

Amino Acid Composition ◽

Acid Composition ◽

Binary Tree ◽

Support Vector ◽

Vector Machines ◽

Structural Classes

Subcellular location prediction of proteins using support vector machines with alignment of block sequences utilizing amino acid composition

BMC Bioinformatics ◽

10.1186/1471-2105-8-466 ◽

2007 ◽

Vol 8 (1) ◽

Cited By ~ 36

Author(s):

Takeyuki Tamura ◽

Tatsuya Akutsu

Keyword(s):

Amino Acid ◽

Support Vector Machines ◽

Amino Acid Composition ◽

Acid Composition ◽

Subcellular Location ◽

Support Vector ◽

Location Prediction ◽

Subcellular Location Prediction ◽

Identifying the Mesophilic and Thermophilic Proteins from Their Amino Acid Composition with ν-Support Vector Machines

Journal of Algorithms & Computational Technology ◽

10.1260/1748-3018.4.3.335 ◽

2010 ◽

Vol 4 (3) ◽

pp. 335-348

Author(s):

Y. R. Ding ◽

Y. J. Cai ◽

J. Sun ◽

B. W. Xu

Keyword(s):

Amino Acid ◽

Support Vector Machines ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes

10.1016/j.jtbi.2007.06.001 ◽

2007 ◽

Vol 248 (3) ◽

pp. 546-551 ◽

Cited By ~ 220

Author(s):

Xi-Bin Zhou ◽

Chao Chen ◽

Zhan-Chao Li ◽

Xiao-Yong Zou

Keyword(s):

Support Vector Machine ◽

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Pseudo Amino Acid Composition

Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition

10.1016/j.jtbi.2010.11.017 ◽

2011 ◽

Vol 271 (1) ◽

pp. 10-17 ◽

Cited By ~ 110

Author(s):

Maqsood Hayat ◽

Asifullah Khan

Keyword(s):

Amino Acid ◽

Membrane Protein ◽

Amino Acid Composition ◽

Acid Composition ◽

Protein Sequence ◽

Sequence Features

Prediction of β-lactamase and its class by Chou’s pseudo-amino acid composition and support vector machine

10.1016/j.jtbi.2014.10.008 ◽

2015 ◽

Vol 365 ◽

pp. 96-103 ◽

Cited By ~ 98

Author(s):

Ravindra Kumar ◽

Abhishikha Srivastava ◽

Bandana Kumari ◽

Manish Kumar

Keyword(s):

Support Vector Machine ◽

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Pseudo Amino Acid Composition