Subcellular location prediction of proteins using support vector machines with alignment of block sequences utilizing amino acid composition

An Ensemble Classifier of Support Vector Machines Used to Predict Protein Structural Classes by Fusing Auto Covariance and Pseudo-Amino Acid Composition

The Protein Journal ◽

10.1007/s10930-009-9222-z ◽

2010 ◽

Vol 29 (1) ◽

pp. 62-67 ◽

Cited By ~ 15

Author(s):

Jiang Wu ◽

Meng-Long Li ◽

Le-Zheng Yu ◽

Chao Wang

Keyword(s):

Amino Acid ◽

Support Vector Machines ◽

Amino Acid Composition ◽

Acid Composition ◽

Ensemble Classifier ◽

Support Vector ◽

Vector Machines ◽

Auto Covariance ◽

Structural Classes

Weighted-support vector machines for predicting membrane protein types based on pseudo-amino acid composition

Protein Engineering Design and Selection ◽

10.1093/protein/gzh061 ◽

2004 ◽

Vol 17 (6) ◽

pp. 509-516 ◽

Cited By ~ 138

Author(s):

M. Wang ◽

J. Yang ◽

G.-P. Liu ◽

Z.-J. Xu ◽

K.-C. Chou

Keyword(s):

Amino Acid ◽

Support Vector Machines ◽

Membrane Protein ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Protein Subcellular Location Prediction Based on Pseudo Amino Acid Composition and PSI-Blast Profile

Journal of Computational and Theoretical Nanoscience ◽

10.1166/jctn.2015.4272 ◽

2015 ◽

Vol 12 (10) ◽

pp. 3756-3762 ◽

Cited By ~ 2

Author(s):

Huimin Xu ◽

Shoujiang Yan ◽

Qi Dai ◽

Ping-An He ◽

Bo Liao ◽

...

Keyword(s):

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

Subcellular Location ◽

Location Prediction ◽

Protein Subcellular Location Prediction

Protein Subcellular Location ◽

Subcellular Location Prediction ◽

Pseudo amino acid composition and multi-class support vector machines approach for conotoxin superfamily classification

Journal of Theoretical Biology ◽

10.1016/j.jtbi.2006.06.014 ◽

2006 ◽

Vol 243 (2) ◽

pp. 252-260 ◽

Cited By ~ 91

Author(s):

Sukanta Mondal ◽

Rajasekaran Bhavna ◽

Rajasekaran Mohan Babu ◽

Suryanarayanarao Ramakumar

Keyword(s):

Amino Acid ◽

Support Vector Machines ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Prediction of protein subcellular localization by support vector machines using multi-scale energy and pseudo amino acid composition

Amino Acids ◽

10.1007/s00726-006-0475-y ◽

2007 ◽

Vol 33 (1) ◽

pp. 69-74 ◽

Cited By ~ 96

Author(s):

J.-Y. Shi ◽

S.-W. Zhang ◽

Q. Pan ◽

Y.-M. Cheng ◽

J. Xie

Keyword(s):

Amino Acid ◽

Support Vector Machines ◽

Subcellular Localization ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Protein Subcellular Localization ◽

Multi Scale ◽

Computational Intelligence and Bioinformatics - Lecture Notes in Computer Science ◽

Protein Subcellular Location Prediction Based on Pseudo Amino Acid Composition and Immune Genetic Algorithm

10.1007/11816102_57 ◽

2006 ◽

pp. 534-542 ◽

Cited By ~ 3

Author(s):

Tongliang Zhang ◽

Yongsheng Ding ◽

Shihuang Shao

Keyword(s):

Genetic Algorithm ◽

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

Subcellular Location ◽

Location Prediction ◽

Immune Genetic Algorithm ◽

Protein Subcellular Location ◽

Subcellular Location Prediction ◽

Protein Subcellular Location Prediction

Prediction of Apoptosis Protein Locations with Genetic Algorithms and Support Vector Machines Through a New Mode of Pseudo Amino Acid Composition

Protein and Peptide Letters ◽

10.2174/0929866511009011473 ◽

2010 ◽

Vol 17 (12) ◽

pp. 1473-1479 ◽

Cited By ~ 49

Author(s):

Krishna Kumar Kandaswamy ◽

Ganesan Pugalenthi ◽

Steffen Moller ◽

Enno Hartmann ◽

Kai Uwe Kalies ◽

...

Keyword(s):

Genetic Algorithms ◽

Amino Acid ◽

Support Vector Machines ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Apoptosis Protein ◽

Identifying the Mesophilic and Thermophilic Proteins from Their Amino Acid Composition with ν-Support Vector Machines

Journal of Algorithms & Computational Technology ◽

10.1260/1748-3018.4.3.335 ◽

2010 ◽

Vol 4 (3) ◽

pp. 335-348

Author(s):

Y. R. Ding ◽

Y. J. Cai ◽

J. Sun ◽

B. W. Xu

Keyword(s):

Amino Acid ◽

Support Vector Machines ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Using pseudo amino acid composition and binary-tree support vector machines to predict protein structural classes

Amino Acids ◽

10.1007/s00726-007-0496-1 ◽

2007 ◽

Vol 33 (4) ◽

pp. 623-629 ◽

Cited By ~ 81

Author(s):

T.-L. Zhang ◽

Y.-S. Ding

Keyword(s):

Amino Acid ◽

Support Vector Machines ◽

Amino Acid Composition ◽

Acid Composition ◽

Binary Tree ◽

Support Vector ◽

Vector Machines ◽

Structural Classes

Prediction and classification of protein subcellular location-sequence-order effect and pseudo amino acid composition

Journal of Cellular Biochemistry ◽

10.1002/jcb.10719 ◽

2003 ◽

Vol 90 (6) ◽

pp. 1250-1260 ◽

Cited By ~ 111

Author(s):

Kuo-Chen Chou ◽

Yu-Dong Cai

Keyword(s):

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

Subcellular Location ◽

Order Effect ◽

Protein Subcellular Location