scholarly journals Genome resource for peanut web blotch causal agent Peyronellaea arachidicola strain YY187

Plant Disease ◽  
2020 ◽  
Author(s):  
Shaojian Li ◽  
Xia Xue ◽  
Meng Gao ◽  
Na Wang ◽  
Xiaowei Cui ◽  
...  
Keyword(s):  
Comparative Genomics ◽  
Genome Size ◽  
Arachis Hypogaea ◽  
Genome Sequence ◽  
Draft Genome ◽  
Causal Agent ◽  
Draft Genome Sequence ◽  
Arachis Hypogaea L ◽  
Symptomatic Leaf

Peyronella arachidicola is the causal agent of peanut (Arachis hypogaea L.) web blotch. Here, we report an assembled draft genome sequence of P. arachidicola strain YY187 obtained from the symptomatic leaf of peanut in China. The genome size is 47.3Mb, consisting of 26 contigs (N50=2.2Mb) with the G+C content of 56.37%. This genome will provide a valuable foundation for further research on genetics and comparative genomics of P. arachidicola.

scholarly journals Improved De Novo Draft Genome Sequence of the Nocavionin-Producing Type Strain Nocardia terpenica IFM 0706 and Comparative Genomics with the Closely Related Strain Nocardia terpenica IFM 0406

2020 ◽  
Vol 9 (34) ◽  
Author(s):  
Anina Buchmann ◽  
Harald Gross
Keyword(s):  
Comparative Genomics ◽  
Genome Size ◽  
Genome Sequence ◽  
Type Strain ◽  
De Novo ◽  
Draft Genome ◽  
Pathogenic Strain ◽  
Draft Genome Sequence ◽  
Related Strain ◽  
Content Type

ABSTRACT We report an improved de novo draft genome sequence of the human-pathogenic strain Nocardia terpenica IFM 0706T. The resequencing unveiled that the genome size is larger than anticipated, reducing significantly the number of contigs and building a basis for comparison with the closely related strain N. terpenica IFM 0406.

scholarly journals Genome Sequence of Clostridium botulinum Strain Adk2012 Associated with a Foodborne Botulinum Case in Tottori, Japan, in 2012

2017 ◽  
Vol 5 (34) ◽  
Author(s):  
Hiroshi Asakura ◽  
Shiori Yamamoto ◽  
Yoshika Momose ◽  
Haru Kato ◽  
Masaaki Iwaki ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Clostridium Botulinum ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Foodborne Botulism

ABSTRACT We report here a draft genome sequence of Clostridium botulinum Adk2012 responsible for a foodborne botulism case that occurred in Tottori, Japan, in 2012. Its genome size was 2,904,173 bp, with 46 rRNAs and 54 tRNAs, at a coverage of 14.5×.

scholarly journals Draft Genome Sequence of Cercospora cf. sigesbeckiae, a Causal Agent of Cercospora Leaf Blight on Soybean

2017 ◽  
Vol 5 (36) ◽  
Author(s):  
Sebastian Albu ◽  
Sandeep Sharma ◽  
Burton H. Bluhm ◽  
Paul P. Price ◽  
Raymond W. Schneider ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Fungal Pathogen ◽  
Draft Genome ◽  
Leaf Blight ◽  
Causal Agent ◽  
Draft Genome Sequence ◽  
Agricultural Commodities

ABSTRACT Cercospora cf. sigesbeckiae is an ascomycete fungal pathogen that infects various plants, including important agricultural commodities, such as soybean. Here, we report the first draft genome sequence and assembly of this pathogen.

scholarly journals Comparative Genomics Analysis of Two Different Virulent Bovine Pasteurella multocida Isolates

2016 ◽  
Vol 2016 ◽  
pp. 1-14 ◽  
Author(s):  
Huihui Du ◽  
Rendong Fang ◽  
Tingting Pan ◽  
Tian Li ◽  
Nengzhang Li ◽  
...  
Keyword(s):  
Comparative Genomics ◽  
Genome Sequence ◽  
Pasteurella Multocida ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Insertion Sequences ◽  
Capsular Type ◽  
Protein Coding ◽  
Protein Coding Genes ◽  
Comparative Genomics Analysis

The Pasteurella multocida capsular type A isolates can cause pneumonia and bovine respiratory disease (BRD). In this study, comparative genomics analysis was carried out to identify the virulence genes in two different virulent P. multocida capsular type A isolates (high virulent PmCQ2 and low virulent PmCQ6). The draft genome sequence of PmCQ2 is 2.32 Mbp and contains 2,002 protein-coding genes, 9 insertion sequence (IS) elements, and 1 prophage region. The draft genome sequence of PmCQ6 is 2.29 Mbp and contains 1,970 protein-coding genes, 2 IS elements, and 3 prophage regions. The genome alignment analysis revealed that the genome similarity between PmCQ2 and PmCQ6 is 99% with high colinearity. To identify the candidate genes responsible for virulence, the PmCQ2 and PmCQ6 were compared together with that of the published genomes of high virulent Pm36950 and PmHN06 and avirulent Pm3480 and Pm70 (capsular type F). Five genes and two insertion sequences are identified in high virulent strains but not in low virulent or avirulent strains. These results indicated that these genes or insertion sequences might be responsible for the virulence of P. multocida, providing prospective candidates for further studies on the pathogenesis and the host-pathogen interactions of P. multocida.

scholarly journals Draft Genome Sequence of a Red Basidiomycete Yeast, Symmetrospora coprosmae Strain UCD350, Isolated from Soil in Ireland

2019 ◽  
Vol 8 (44) ◽  
Author(s):  
Jameela Almasoud ◽  
Laoise McArdle ◽  
Ryan Henne ◽  
Karen Mathews ◽  
Ísla O’Connor ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Red Yeast

Symmetrospora coprosmae is a red yeast from the subphylum Pucciniomycotina in the phylum Basidiomycota. Here, we present the first genome sequence of S. coprosmae strain UCD350, from an isolate collected from soil in Ireland. The genome size is 20.2 Mb.

scholarly journals Draft Genome Sequence of Lactobacillus sakei Strain FBL1, a Probiotic Bacterium Isolated from Mukeunji , a Long-Fermented Kimchi, in South Korea

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Jae-Hwan Kim ◽  
Eiseul Kim ◽  
Chang-Gyeom Kim ◽  
Dong-Won Choo ◽  
Hae-Yeong Kim
Keyword(s):  
South Korea ◽  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Probiotic Bacterium ◽  
Draft Genome Sequence ◽  
Lactobacillus Sakei

This report describes the 2,032,158-bp draft genome sequence of Lactobacillus sakei ( L. sakei ) strain FBL1, isolated from mukeunji purchased at the Gwangju World Kimchi Culture Festival in 2012, South Korea. The total draft genome size was 2,032,158 bp with a G+C content of 41.2%.

scholarly journals Draft Genome Sequence of Filamentous Fungus Phialemoniopsis curvata, Isolated from Diesel Fuel

2019 ◽  
Vol 8 (30) ◽  
Author(s):  
Vanessa A. Varaljay ◽  
Wanda J. Lyon ◽  
Audra L. Crouch ◽  
Carrie A. Drake ◽  
Jeffrey M. Hollomon ◽  
...  
Keyword(s):  
Fatty Acid ◽  
Genome Size ◽  
Genome Sequence ◽  
Diesel Fuel ◽  
Filamentous Fungus ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Beta Oxidation ◽  
Content Type

Phialemoniopsis curvata D216 is a filamentous fungus isolated from contaminated diesel fuel. The genome size is 40.3 Mbp with a G+C content of 54.81%. Its genome encodes enzymes and pathways likely involved in the degradation of and survival in fuel, including lipases, fatty acid transporters, and beta oxidation.

scholarly journals Draft Genome Sequence of Desulfovibrio BerOc1, a Mercury-Methylating Strain

2017 ◽  
Vol 5 (3) ◽  
Author(s):  
Marisol Goñi Urriza ◽  
Claire Gassie ◽  
Oliver Bouchez ◽  
Christophe Klopp ◽  
Rémy Guyoneaud
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Mediterranean Coast ◽  
Draft Genome Sequence ◽  
Mercury Methylation ◽  
Sulfate Reducing

ABSTRACT Desulfovibrio BerOc1 is a sulfate-reducing bacterium isolated from the Berre lagoon (French Mediterranean coast). BerOc1 is able to methylate and demethylate mercury. The genome size is 4,081,579 bp assembled into five contigs. We identified the hgcA and hgcB genes involved in mercury methylation, but not those responsible for mercury demethylation.

scholarly journals Draft Genome Sequence of Rummeliibacillus sp. Strain TYF005, a Physiologically Recalcitrant Bacterium with High Ethanol and Salt Tolerance Isolated from Spoilage Vinegar

2019 ◽  
Vol 8 (31) ◽  
Author(s):  
Min Li ◽  
Yao Li ◽  
Xiaojun Fan ◽  
Yuhong Qin ◽  
Yongji He ◽  
...  
Keyword(s):  
Salt Tolerance ◽  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Gc Content ◽  
Thermophilic Bacterium ◽  
Draft Genome Sequence ◽  
Content Type ◽  
High Ethanol

Rummeliibacillus sp. strain TYF005 is a thermophilic bacterium with high ethanol (8% vol/vol) and salt (13% wt/vol) tolerance that was isolated from spoilage vinegar. Here, we report the draft genome sequence of this strain, which has 117 scaffolds with a total genome size of 3.7 Mb and a 34.4% GC content.

scholarly journals Draft Genome Sequence of Agrobacterium deltaense Strain CNPSo 3391, Isolated from a Soybean Nodule in Mozambique

2019 ◽  
Vol 8 (10) ◽  
Author(s):  
Anderson José Scherer ◽  
Jakeline Renata Marçon Delamuta ◽  
Renan Augusto Ribeiro ◽  
Amaral Machaculeha Chibeba ◽  
Stephen Kyei-Boahen ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Soybean Nodule

Agrobacterium deltaense strain CNPSo 3391 was isolated from a soybean nodule in Mozambique. Its genome size was estimated at 4,926,588 bp.

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