scholarly journals Deciphering the Metal Dependency of Novel Nicotinate Hydroxylase from Bacillus niacini

2016 ◽  
Vol 30 (S1) ◽  
Author(s):  
Jessica A Meek ◽  
Laura A Sherer ◽  
Mark J Snider
Keyword(s):  
2019 ◽  
Vol 124 ◽  
pp. 10-16 ◽  
Author(s):  
Hongjie Bian ◽  
Mengfei Cao ◽  
Huan Wen ◽  
Zhilei Tan ◽  
Shiru Jia ◽  
...  

2020 ◽  
Vol 15 (1) ◽  
pp. 330-347 ◽  
Author(s):  
Sang-Moo Lee ◽  
Hyun Gi Kong ◽  
Geun Cheol Song ◽  
Choong-Min Ryu

AbstractEnrichment of protective microbiota in the rhizosphere facilitates disease suppression. However, how the disruption of protective rhizobacteria affects disease suppression is largely unknown. Here, we analyzed the rhizosphere microbial community of a healthy and diseased tomato plant grown <30-cm apart in a greenhouse at three different locations in South Korea. The abundance of Gram-positive Actinobacteria and Firmicutes phyla was lower in diseased rhizosphere soil (DRS) than in healthy rhizosphere soil (HRS) without changes in the causative Ralstonia solanacearum population. Artificial disruption of Gram-positive bacteria in HRS using 500-μg/mL vancomycin increased bacterial wilt occurrence in tomato. To identify HRS-specific and plant-protective Gram-positive bacteria species, Brevibacterium frigoritolerans HRS1, Bacillus niacini HRS2, Solibacillus silvestris HRS3, and Bacillus luciferensis HRS4 were selected from among 326 heat-stable culturable bacteria isolates. These four strains did not directly antagonize R. solanacearum but activated plant immunity. A synthetic community comprising these four strains displayed greater immune activation against R. solanacearum and extended plant protection by 4 more days in comparison with each individual strain. Overall, our results demonstrate for the first time that dysbiosis of the protective Gram-positive bacterial community in DRS promotes the incidence of disease.


2003 ◽  
Author(s):  
Charles Thomas Parker ◽  
Nicole Danielle Osier ◽  
George M Garrity
Keyword(s):  

2014 ◽  
Vol 64 (Pt_8) ◽  
pp. 2668-2674 ◽  
Author(s):  
Pramod Poudel ◽  
Hirokuni Miyamoto ◽  
Hisashi Miyamoto ◽  
Yuki Okugawa ◽  
Yukihiro Tashiro ◽  
...  

A novel Gram-staining-positive, endospore-forming, rod-shaped, facultatively anaerobic, thermotolerant bacterium, designated strain MO-04T, was isolated from a marine animal resources (MAR) compost. The 16S rRNA gene sequence of strain MO-04T showed 99.4 % similarity with Bacillus thermolactis R-6488T, 94.1 % similarity with Bacillus thermoamylovorans CNCM I-1378T, 93.3 % similarity with Bacillus humi LMG 22167T, 93.2 % similarity with Bacillus niacini IFO 15566T and the similarities with other species were less than 93 %. DNA–DNA relatedness between strain MO-04T and B. thermolactis DSM 23332T was 45 %. The DNA G+C content of strain MO-04T was 33.4 mol%, comparatively lower than that of B. thermolactis R-6488T (35.0 mol%). Strain MO-04T grew at 35–61 °C (optimum 50 °C), pH 4.5–9.0 (optimum pH 7.2) and tolerated up to 8.0 % (w/v) NaCl (optimum 2 %). The MO-04T cell wall peptidoglycan type was meso-2,6-diaminopimelic acid, and the major fatty acids were C16 : 1, C14 : 1, C17 : 0 and C17 : 1. The major polar lipids were represented by diphosphatidylglycerol and phosphatidylglycerol and two unidentified phospholipids. The analysed polyphasic data presented here clearly indicate that the isolate MO-04T is considered to represent a novel species within the genus Bacillus for which the name Bacillus kokeshiiformis sp. nov. is proposed. The type strain of B. kokeshiiformis is MO-04T ( = JCM 19325T = KCTC 33163T).


2020 ◽  
Vol 37 (6) ◽  
pp. 1020-1028
Author(s):  
Hongjie Bian ◽  
Gaoyang Wang ◽  
Mengfei Cao ◽  
Ziyuan Wang ◽  
Jiandong Cui

2013 ◽  
Vol 63 (Pt_3) ◽  
pp. 855-860 ◽  
Author(s):  
Ngoc-Lan Nguyen ◽  
Yeon-Ju Kim ◽  
Van-An Hoang ◽  
Jin Woo Min ◽  
Zhi-qi Liang ◽  
...  

A novel bacterial strain DCY53T was isolated from a soil sample from a ginseng field and was characterized using a polyphasic approach. Cells were Gram-reaction-positive, rod-shaped, endospore-forming and motile with flagella. The strain was aerobic, catalase- and oxidase-positive, optimum growth temperature and pH were 30–37 °C and 6.0–7.5, respectively. On the basis of 16S rRNA gene sequence analysis, strain DCY53T was shown to belong to the genus Bacillus and the closest phylogenetic relatives were Bacillus pocheonensis KCTC 13943T (98.3 %), Bacillus bataviensis LMG 21833T (98.0 %), Bacillus soli LMG 21838T (97.9 %), Bacillus drentensis LMG 21831T (97.8 %), Bacillus niacini DSM 2923T (97.8 %), Bacillus novalis LMG 21837T (97.7 %), Bacillus vireti LMG 21834T (97.6 %) and Bacillus fumarioli LMG 17489T (97.3 %). The DNA G+C content was 43.6 mol% and the predominant respiratory quinone was MK-7. The major fatty acids were iso-C14 : 0, iso-C15 : 0, iso-C16 : 0 and anteiso-C15 : 0. The DNA–DNA relatedness with closest relatives was below 55 %. The results of the genotypic analysis in combination with chemotaxonomic and physiological data demonstrated that DCY53T represented a novel species within the genus Bacillus , for which we propose the name Bacillus ginsengisoli. The type strain is DCY53T ( = KCTC 13945T = JCM 17335T).


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