An X-ray study of the physiological-temperature form of hen egg-white lysozyme at 2 Å resolution

1983 ◽  
Vol 217 (1209) ◽  
pp. 471-489 ◽  

The structure of the high-temperature orthorhombic form of hen egg-white lysozyme has been determined at 2.0 Å resolution. Initial images of the molecule were obtained at 6.0 Å resolution both by double isomorphous replacement and by molecular replacement with use of the known structure of the room-temperature tetragonal lysozyme. The initial model thus obtained ( R = 0.52 at 6.0 Å) was refined first as a rigid body at 6.0 Å and then by restrained least squares at 2.5 Å and later at 2.0 Å resolution. The final model ( R = 0.23 at 2.0 Å) was compared with that of the tetragonal form: the structures are very similar with a root mean square difference in superimposed α-carbon coordinates of 0.46 Å. There are, however, differences which are caused by a crystal contact involving the upper part of this active site in the high-temperature orthorhombic form. Because of this, residues Trp 62 and Pro 70 are much better ordered than in the tetragonal form, where they are exposed to solvent. These differences can partly explain the difficulty of inhibitor-binding in high-temperature orthorhombic crystals, but do not seem to reflect the particular behaviour of lysozyme in solution at high temperature.

1999 ◽  
Vol 55 (7) ◽  
pp. 1320-1328 ◽  
Author(s):  
Edgar Weckert ◽  
Kerstin Hölzer ◽  
Klaus Schroer ◽  
Johannes Zellner ◽  
Kurt Hümmer

The feasibility of measuring a set of triplet phases large enough to solve the structure of a small protein has been evaluated. A total of about 850 triplet phases have been measured from the tetragonal form of hen egg-white lysozyme. From these triplet phases, about 750 single phases can be derived. The experimental details of these measurements as well as the results, the values of the measured triplet phases, are reported. Additional experimental data from other small proteins are also presented.


Crystals of hen egg-white lysozyme, grown at pH 4.7 (Alderton & Fevold 1946), are tetragonal with a = b = 79.1 Å, c = 37.9 Å, space group P 4 3 2 1 2 (Palmer, Ballantyre & Galvin 1948; Blake, Fenn, North, Phillips & Poljak 1962). Each of the eight asymmetric units in the cell comprises a single lysozyme molecule, molecular weight about 14 600, together with 1 M sodium chloride solution which constitutes some 33.5% of the weight of the crystal (Steinrauf 1959). The structure of these crystals has been determined by X-ray analysis by the method of multiple isomorphous replacement developed in the studies of haemoglobin (Green, Ingram & Perutz 1954; Blow 1958; Perutz, Rossmann, Cullis, Muirhead, Will & North 1960) and myoglobin (Kendrew, Dickerson, Strandberg, Hart, Davies, Phillips & Shore 1960). Anomalous scattering data were used in conjunction with the isomorphous replacement intensity differences (North 1965) to form a joint probability distribution for the phase of each reflexion. The position of the centroid of each probability distribution gave a phase angle and weighting factor for each reflexion from which the electron density map with minimum r.m.s. error was calculated (Blow & Crick 1959). A large number of different heavy atom derivatives were studied (Poljak 1963; Blake, Koenig, Mair, North, Phillips & Sarma 1965) and three proved satisfactory for calculating an electron density map at 2 Å resolution. They contained respectively ortho -mercuri hydroxytoluene para -sulphonic acid, UO 2 F 5 3- and an ion derived from UO 2 (NO 3 ) 2 , probably UO 2 (OH) n (n-2)-


1997 ◽  
Vol 94 ◽  
pp. 356-364 ◽  
Author(s):  
M Faraggi ◽  
E Bettelheim ◽  
M Weinstein

2021 ◽  
pp. 138830
Author(s):  
Baoliang Ma ◽  
Haohao Wang ◽  
Yujie Liu ◽  
Fang Wu ◽  
Xudong Zhu

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