An efficient approach to converting three-dimensional image data into highly accurate computational models

2008 ◽  
Vol 366 (1878) ◽  
pp. 3155-3173 ◽  
Author(s):  
P.G Young ◽  
T.B.H Beresford-West ◽  
S.R.L Coward ◽  
B Notarberardino ◽  
B Walker ◽  
...  
Keyword(s):  
Mesh Generation ◽  
Computational Models ◽  
Three Dimensional ◽  
Image Data ◽  
Model Material ◽  
Imaging Data ◽  
Material Inhomogeneity ◽  
Dimensional Image ◽  
Wide Range ◽  
Impact Modelling

Image-based meshing is opening up exciting new possibilities for the application of computational continuum mechanics methods (finite-element and computational fluid dynamics) to a wide range of biomechanical and biomedical problems that were previously intractable owing to the difficulty in obtaining suitably realistic models. Innovative surface and volume mesh generation techniques have recently been developed, which convert three-dimensional imaging data, as obtained from magnetic resonance imaging, computed tomography, micro-CT and ultrasound, for example, directly into meshes suitable for use in physics-based simulations. These techniques have several key advantages, including the ability to robustly generate meshes for topologies of arbitrary complexity (such as bioscaffolds or composite micro-architectures) and with any number of constituent materials (multi-part modelling), providing meshes in which the geometric accuracy of mesh domains is only dependent on the image accuracy (image-based accuracy) and the ability for certain problems to model material inhomogeneity by assigning the properties based on image signal strength. Commonly used mesh generation techniques will be compared with the proposed enhanced volumetric marching cubes (EVoMaCs) approach and some issues specific to simulations based on three-dimensional image data will be discussed. A number of case studies will be presented to illustrate how these techniques can be used effectively across a wide range of problems from characterization of micro-scaffolds through to head impact modelling.

scholarly journals Layered manufacturing for medical imaging data

2019 ◽  
Vol 11 (8) ◽  
pp. 168781401987139
Author(s):  
Shyh-Kuang Ueng ◽  
Hsin-Cheng Huang ◽  
Chieh-Shih Chou ◽  
Hsuan-Kai Huang
Keyword(s):  
Medical Image ◽  
Three Dimensional ◽  
Image Data ◽  
Target Object ◽  
Layered Manufacturing ◽  
Boundary Representation ◽  
Data Sets ◽  
Imaging Data ◽  
Distance Field ◽  
Dimensional Image

Layered manufacturing techniques have been successfully employed to construct scanned objects from three-dimensional medical image data sets. The printed physical models are useful tools for anatomical exploration, surgical planning, teaching, and related medical applications. Before fabricating scanned objects, we have to first build watertight geometrical representations of the target objects from medical image data sets. Many algorithms had been developed to fulfill this duty. However, some of these methods require extra efforts to resolve ambiguity problems and to fix broken surfaces. Other methods cannot generate legitimate models for layered manufacturing. To alleviate these problems, this article presents a modeling procedure to efficiently create geometrical representations of objects from computerized tomography scan and magnetic resonance imaging data sets. The proposed procedure extracts the iso-surface of the target object from the input data set at the first step. Then it converts the iso-surface into a three-dimensional image and filters this three-dimensional image using morphological operators to remove dangling parts and noises. At the next step, a distance field is computed in the three-dimensional image space to approximate the surface of the target object. Then the proposed procedure smooths the distance field to soothe sharp corners and edges of the target object. Finally, a boundary representation is built from the distance field to model the target object. Compared with conventional modeling techniques, the proposed method possesses the following advantages: (1) it reduces human efforts involved in the geometrical modeling process. (2) It can construct both solid and hollow models for the target object, and wall thickness of the hollow models is adjustable. (3) The resultant boundary representation guarantees to form a watertight solid geometry, which is printable using three-dimensional printers. (4) The proposed procedure allows users to tune the precision of the geometrical model to compromise with the available computational resources.

Analysis of Three-Dimensional Image Data: Display and Feature Tracking

1992 ◽  
pp. 237-256 ◽  
Author(s):  
Zvi Kam ◽  
Hans Chen ◽  
John W. Sedat ◽  
David A. Agard
Keyword(s):  
Feature Tracking ◽  
Three Dimensional ◽  
Image Data ◽  
Data Display ◽  
Dimensional Image

scholarly journals Deep learning classifiers for near infrared spectral imaging: a tutorial

2020 ◽  
Author(s):  
Jun-Li Xu ◽  
Cecilia Riccioli ◽  
Ana Herrero-Langreo ◽  
Aoife Gowen
Keyword(s):  
Deep Learning ◽  
Visual Recognition ◽  
Near Infrared ◽  
Three Dimensional ◽  
Spectral Imaging ◽  
Learning Approaches ◽  
Imaging Data ◽  
Spectral Image ◽  
Background Removal ◽  
Wide Range

Deep learning (DL) has recently achieved considerable successes in a wide range of applications, such as speech recognition, machine translation and visual recognition. This tutorial provides guidelines and useful strategies to apply DL techniques to address pixel-wise classification of spectral images. A one-dimensional convolutional neural network (1-D CNN) is used to extract features from the spectral domain, which are subsequently used for classification. In contrast to conventional classification methods for spectral images that examine primarily the spectral context, a three-dimensional (3-D) CNN is applied to simultaneously extract spatial and spectral features to enhance classificationaccuracy. This tutorial paper explains, in a stepwise manner, how to develop 1-D CNN and 3-D CNN models to discriminate spectral imaging data in a food authenticity context. The example image data provided consists of three varieties of puffed cereals imaged in the NIR range (943–1643 nm). The tutorial is presented in the MATLAB environment and scripts and dataset used are provided. Starting from spectral image pre-processing (background removal and spectral pre-treatment), the typical steps encountered in development of CNN models are presented. The example dataset provided demonstrates that deep learning approaches can increase classification accuracy compared to conventional approaches, increasing the accuracy of the model tested on an independent image from 92.33 % using partial least squares-discriminant analysis to 99.4 % using 3-CNN model at pixel level. The paper concludes with a discussion on the challenges and suggestions in the application of DL techniques for spectral image classification.

WAVELET DE-NOISING OF OPTICAL TERAHERTZ PULSE IMAGING DATA

2001 ◽  
Vol 01 (02) ◽  
pp. L65-L69 ◽  
Author(s):  
BRADLEY FERGUSON ◽  
DEREK ABBOTT
Keyword(s):  
Image Data ◽  
Imaging Data ◽  
Terahertz Pulse ◽  
Spectroscopic Measurements ◽  
Wide Range ◽  
Terahertz Pulse Imaging

Terahertz pulse imaging (TPI) systems are used to obtain sub-millimeter spectroscopic measurements for a wide range of applications. This letter highlights the use of wavelet de-noising to markedly improve the SNR of the obtained data, increasing the SNR by up to 10 dB. A comparison of different wavelet families and properties is presented and the results demonstrated on THz image data of an oak leaf and an Australian $100 note.

scholarly journals Proactive Construction of an Annotated Imaging Database for Artificial Intelligence Training

2020 ◽  
Author(s):  
Caroline Bivik Stadler ◽  
Martin Lindvall ◽  
Claes Lundström ◽  
Anna Bodén ◽  
Karin Lindman ◽  
...  
Keyword(s):  
Artificial Intelligence ◽  
Image Data ◽  
Ground Truth ◽  
Lessons Learned ◽  
Training Data ◽  
Imaging Data ◽  
High Quality ◽  
High Quality Image ◽  
Specific Objective ◽  
Wide Range

Abstract Artificial intelligence (AI) holds much promise for enabling highly desired imaging diagnostics improvements. One of the most limiting bottlenecks for the development of useful clinical-grade AI models is the lack of training data. One aspect is the large amount of cases needed and another is the necessity of high-quality ground truth annotation. The aim of the project was to establish and describe the construction of a database with substantial amounts of detail-annotated oncology imaging data from pathology and radiology. A specific objective was to be proactive, that is, to support undefined subsequent AI training across a wide range of tasks, such as detection, quantification, segmentation, and classification, which puts particular focus on the quality and generality of the annotations. The main outcome of this project was the database as such, with a collection of labeled image data from breast, ovary, skin, colon, skeleton, and liver. In addition, this effort also served as an exploration of best practices for further scalability of high-quality image collections, and a main contribution of the study was generic lessons learned regarding how to successfully organize efforts to construct medical imaging databases for AI training, summarized as eight guiding principles covering team, process, and execution aspects.

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