scholarly journals Modeling the hemodynamic response function using simultaneous EEG-fMRI data and convolutional sparse coding analysis with rank-1 constraints

2020 ◽  
Author(s):  
Prokopis C. Prokopiou ◽  
Michalis Kassinopoulos ◽  
Alba Xifra-Porxas ◽  
Marie-Hélène Boudrias ◽  
Georgios D. Mitsis

AbstractOver the last few years, an increasing body of evidence points to the hemodynamic response function as an important confound of resting-state functional connectivity. Several studies in the literature proposed using blind deconvolution of resting-state fMRI data to retrieve the HRF, which can be subsequently used for hemodynamic deblurring. A basic hypothesis in these studies is that relevant information of the resting-state brain dynamics is condensed in discrete events resulting in large amplitude peaks in the BOLD signal. In this work, we showed that important information of resting-state activity, in addition to the larger amplitude peaks, is also concentrated in lower amplitude peaks. Moreover, due to the strong effect of physiological noise and head motion on the BOLD signal, which in many cases may not be completely removed after preprocessing, the neurophysiological origin of the large amplitude BOLD signal peaks is questionable. Hence, focusing on the large amplitude BOLD signal peaks may yield biased HRF estimates. To define discrete events of neuronal origins, we proposed using simultaneous EEG-fMRI along with convolutional sparse coding analysis. Our results suggested that events detected in the EEG are able to describe the slow oscillations of the BOLD signal and to obtain consistent HRF shapes across subjects under both task-based and resting-state conditions.

2015 ◽  
Author(s):  
Guo-Rong Wu ◽  
Daniele Marinazzo

Retrieving the hemodynamic response function (HRF) in fMRI data is important for several reasons. Apart from its use as a physiological biomarker, HRF can act as a confounder in connectivity studies. In task-based fMRI is relatively straightforward to retrieve the HRF since its onset time is known. This is not the case for resting state acquisitions. We present a procedure to retrieve the hemodynamic response function from resting state (RS) fMRI data. The fundamentals of the procedure are further validated by a simulation and with ASL data. We then present the modifications to the shape of the HRF at rest when opening and closing the eyes using a simultaneous EEG-fMRI dataset. Finally, the HRF variability is further validated on a test-retest dataset.


2020 ◽  
Author(s):  
Prokopis C. Prokopiou ◽  
Alba Xifra-Porxas ◽  
Michalis Kassinopoulos ◽  
Marie-Hélène Boudrias ◽  
Georgios D. Mitsis

AbstractIn this work, we investigated the regional characteristics of the dynamic interactions between oscillatory sources of ongoing neural activity obtained using electrophysiological recordings and the corresponding changes in the BOLD signal using simultaneous EEG-fMRI measurements acquired during a motor task, as well as under resting conditions. We casted this problem within a system-theoretic framework, where we initially performed distributed EEG source space reconstruction and subsequently employed block-structured linear and non-linear models to predict the BOLD signal from the instantaneous power in narrow frequency bands of the source local field potential (LFP) spectrum (<100 Hz). Our results suggest that the dynamics of the BOLD signal can be sufficiently described as the convolution between a linear combination of the power profile within individual frequency bands with a hemodynamic response function (HRF). During the motor task, BOLD signal variance was mainly explained by the EEG oscillations in the beta band. On the other hand, during resting-state all frequency bands of EEG exhibited significant contributions to BOLD signal variance. Moreover, the contribution of each band was found to be region specific. Our results also revealed considerable variability of the HRF across different brain regions. Specifically, sensory-motor cortices exhibited positive HRF shapes, whereas parietal and occipital cortices exhibited negative HRF shapes under both experimental conditions.


2015 ◽  
Author(s):  
Guo-Rong Wu ◽  
Daniele Marinazzo

Retrieving the hemodynamic response function (HRF) in fMRI data is important for several reasons. Apart from its use as a physiological biomarker, HRF can act as a confounder in connectivity studies. In task-based fMRI is relatively straightforward to retrieve the HRF since its onset time is known. This is not the case for resting state acquisitions. We present a procedure to retrieve the hemodynamic response function from resting state (RS) fMRI data. The fundamentals of the procedure are further validated by a simulation and with ASL data. We then present the modifications to the shape of the HRF at rest when opening and closing the eyes using a simultaneous EEG-fMRI dataset. Finally, the HRF variability is further validated on a test-retest dataset.


2013 ◽  
Vol 27 (2) ◽  
pp. 171-184 ◽  
Author(s):  
Silvia Francesca Storti ◽  
Emanuela Formaggio ◽  
Deborah Moretto ◽  
Alessandra Bertoldo ◽  
Francesca Benedetta Pizzini ◽  
...  

2013 ◽  
Vol 34 (2) ◽  
pp. 316-324 ◽  
Author(s):  
Zuyao Y Shan ◽  
Margaret J Wright ◽  
Paul M Thompson ◽  
Katie L McMahon ◽  
Gabriella G A M Blokland ◽  
...  

The hemodynamic response function (HRF) describes the local response of brain vasculature to functional activation. Accurate HRF modeling enables the investigation of cerebral blood flow regulation and improves our ability to interpret fMRI results. Block designs have been used extensively as fMRI paradigms because detection power is maximized; however, block designs are not optimal for HRF parameter estimation. Here we assessed the utility of block design fMRI data for HRF modeling. The trueness (relative deviation), precision (relative uncertainty), and identifiability (goodness-of-fit) of different HRF models were examined and test–retest reproducibility of HRF parameter estimates was assessed using computer simulations and fMRI data from 82 healthy young adult twins acquired on two occasions 3 to 4 months apart. The effects of systematically varying attributes of the block design paradigm were also examined. In our comparison of five HRF models, the model comprising the sum of two gamma functions with six free parameters had greatest parameter accuracy and identifiability. Hemodynamic response function height and time to peak were highly reproducible between studies and width was moderately reproducible but the reproducibility of onset time was low. This study established the feasibility and test–retest reliability of estimating HRF parameters using data from block design fMRI studies.


Data in Brief ◽  
2018 ◽  
Vol 17 ◽  
pp. 1175-1179 ◽  
Author(s):  
D. Rangaprakash ◽  
Guo-Rong Wu ◽  
Daniele Marinazzo ◽  
Xiaoping Hu ◽  
Gopikrishna Deshpande

2015 ◽  
Author(s):  
Guorong Wu ◽  
Daniele Marinazzo

It has been shown that resting state brain dynamics can be characterized by looking at sparse blood-oxygen-level dependent (BOLD) events, which can be retrieved by point process analysis. Cardiac activity can also induce changes in the BOLD signal, thus affect both the number of these events and the mapping between neural events and BOLD signal, namely the hemodynamic response. To isolate neural activity and autonomic effects, we compare the resting state hemodynamic response retrieved by means of a point process analysis with and without deconvolving the cardiac fluctuations. Brainstem and the surrounding cortical area (such as precuneus, insula etc.) are found to be significantly affected by cardiac pulses. Methodological and physiological implications are then discussed.


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