scholarly journals Modeling of the Hemodynamic Responses in Block Design fMRI Studies

2013 ◽  
Vol 34 (2) ◽  
pp. 316-324 ◽  
Author(s):  
Zuyao Y Shan ◽  
Margaret J Wright ◽  
Paul M Thompson ◽  
Katie L McMahon ◽  
Gabriella G A M Blokland ◽  
...  

The hemodynamic response function (HRF) describes the local response of brain vasculature to functional activation. Accurate HRF modeling enables the investigation of cerebral blood flow regulation and improves our ability to interpret fMRI results. Block designs have been used extensively as fMRI paradigms because detection power is maximized; however, block designs are not optimal for HRF parameter estimation. Here we assessed the utility of block design fMRI data for HRF modeling. The trueness (relative deviation), precision (relative uncertainty), and identifiability (goodness-of-fit) of different HRF models were examined and test–retest reproducibility of HRF parameter estimates was assessed using computer simulations and fMRI data from 82 healthy young adult twins acquired on two occasions 3 to 4 months apart. The effects of systematically varying attributes of the block design paradigm were also examined. In our comparison of five HRF models, the model comprising the sum of two gamma functions with six free parameters had greatest parameter accuracy and identifiability. Hemodynamic response function height and time to peak were highly reproducible between studies and width was moderately reproducible but the reproducibility of onset time was low. This study established the feasibility and test–retest reliability of estimating HRF parameters using data from block design fMRI studies.

2015 ◽  
Author(s):  
Guo-Rong Wu ◽  
Daniele Marinazzo

Retrieving the hemodynamic response function (HRF) in fMRI data is important for several reasons. Apart from its use as a physiological biomarker, HRF can act as a confounder in connectivity studies. In task-based fMRI is relatively straightforward to retrieve the HRF since its onset time is known. This is not the case for resting state acquisitions. We present a procedure to retrieve the hemodynamic response function from resting state (RS) fMRI data. The fundamentals of the procedure are further validated by a simulation and with ASL data. We then present the modifications to the shape of the HRF at rest when opening and closing the eyes using a simultaneous EEG-fMRI dataset. Finally, the HRF variability is further validated on a test-retest dataset.


2015 ◽  
Author(s):  
Guo-Rong Wu ◽  
Daniele Marinazzo

Retrieving the hemodynamic response function (HRF) in fMRI data is important for several reasons. Apart from its use as a physiological biomarker, HRF can act as a confounder in connectivity studies. In task-based fMRI is relatively straightforward to retrieve the HRF since its onset time is known. This is not the case for resting state acquisitions. We present a procedure to retrieve the hemodynamic response function from resting state (RS) fMRI data. The fundamentals of the procedure are further validated by a simulation and with ASL data. We then present the modifications to the shape of the HRF at rest when opening and closing the eyes using a simultaneous EEG-fMRI dataset. Finally, the HRF variability is further validated on a test-retest dataset.


2019 ◽  
Vol In Press (In Press) ◽  
Author(s):  
Seyedeh Mahboobe Seyed Abbasi ◽  
Mohammad Ali Oghabian ◽  
Seyed Salman Zakariaee ◽  
Abbas Rahimiforoushani

2006 ◽  
Vol 16 (02) ◽  
pp. 125-138 ◽  
Author(s):  
R. SRIKANTH ◽  
A. G. RAMAKRISHNAN

We present a new algorithm to estimate hemodynamic response function (HRF) and drift components of fMRI data in wavelet domain. The HRF is modeled by both parametric and nonparametric models. The functional Magnetic resonance Image (fMRI) noise is modeled as a fractional brownian motion (fBm). The HRF parameters are estimated in wavelet domain by exploiting the property that wavelet transforms with a sufficient number of vanishing moments decorrelates a fBm process. Using this property, the noise covariance matrix in wavelet domain can be assumed to be diagonal whose entries are estimated using the sample variance estimator at each scale. We study the influence of the sampling rate of fMRI time series and shape assumption of HRF on the estimation performance. Results are presented by adding synthetic HRFs on simulated and null fMRI data. We also compare these methods with an existing method,1 where correlated fMRI noise is modeled by a second order polynomial functions.


2017 ◽  
Vol 37 (10) ◽  
pp. 3433-3445 ◽  
Author(s):  
Rebecca J Williams ◽  
Bradley G Goodyear ◽  
Stefano Peca ◽  
Cheryl R McCreary ◽  
Richard Frayne ◽  
...  

Cerebral amyloid angiopathy (CAA) is a small-vessel disease preferentially affecting posterior brain regions. Recent evidence has demonstrated the efficacy of functional MRI in detecting CAA-related neurovascular injury, however, it is unknown whether such perturbations are associated with changes in the hemodynamic response function (HRF). Here we estimated HRFs from two different brain regions from block design activation data, in light of recent findings demonstrating how block designs can accurately reflect HRF parameter estimates while maximizing signal detection. Patients with a diagnosis of probable CAA and healthy controls performed motor and visual stimulation tasks. Time-to-peak (TTP), full-width at half-maximum (FWHM), and area under the curve (AUC) of the estimated HRFs were compared between groups and to MRI features associated with CAA including cerebral microbleed (CMB) count. Motor HRFs in CAA patients showed significantly wider FWHM ( P = 0.006) and delayed TTP ( P = 0.03) compared to controls. In the patient group, visual HRF FWHM was positively associated with CMB count ( P = 0.03). These findings indicate that hemodynamic abnormalities in patients with CAA may be reflected in HRFs estimated from block designs across different brain regions. Moreover, visual FWHM may be linked to structural MR indications associated with CAA.


NeuroImage ◽  
2006 ◽  
Vol 32 (1) ◽  
pp. 238-247 ◽  
Author(s):  
Yingli Lu ◽  
Andrew P. Bagshaw ◽  
Christophe Grova ◽  
Eliane Kobayashi ◽  
François Dubeau ◽  
...  

NeuroImage ◽  
2007 ◽  
Vol 34 (1) ◽  
pp. 195-203 ◽  
Author(s):  
Yingli Lu ◽  
Christophe Grova ◽  
Eliane Kobayashi ◽  
François Dubeau ◽  
Jean Gotman

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