scholarly journals Global Structure of the Intrinsically Disordered Protein Tau Emerges from its Local Structure

2021 ◽  
Author(s):  
Lukas S. Stelzl ◽  
Lisa M. Pietrek ◽  
Andrea Holla ◽  
Javier S. Oroz ◽  
Mateusz Sikora ◽  
...  

The paradigmatic disordered protein tau plays an important role in neuronal function and neurodegenerative diseases. To disentangle the factors controlling the balance between functional and disease-associated conformational states, we build a structural ensemble of the tau K18 fragment containing the four pseudorepeat domains involved in both microtubule binding and amyloid fibril formation. We assemble 129-residue-long tau K18 chains at atomic resolution from an extensive fragment library constructed with molecular dynamics simulations. We introduce a reweighted hierarchical chain growth (RHCG) algorithm that integrates experimental data reporting on the local structure into the assembly process in a systematic manner. By combining Bayesian ensemble refinement with importance sampling, we obtain well-defined ensembles and overcome the problem of exponentially varying weights in the integrative modeling of long-chain polymeric molecules. The resulting tau K18 ensembles capture nuclear magnetic resonance (NMR) chemical shift and J-coupling measurements. Without further fitting, we achieve excellent agreement with measurements of NMR residual dipolar couplings. The good agreement with experimental measures of global structures such as single-molecule Förster resonance energy transfer (FRET) efficiencies is improved further by ensemble refinement. By comparing wild-type and mutant ensembles, we show that pathogenic single-point P301 mutations shift the population from the turn-like conformations of the functional microtubule-bound state to the extended conformations of disease-associated tau fibrils. RHCG thus provides us with an atomically resolved view of the population equilibrium between functional and aggregation-prone states of tau K18, and demonstrates that global structural characteristics of this intrinsically disordered protein emerge from its local structure.

2014 ◽  
Vol 106 (2) ◽  
pp. 354a
Author(s):  
Peter J. Chung ◽  
Joanna B. Deek ◽  
Chaeyon Song ◽  
Herb P. Miller ◽  
M.C. Choi ◽  
...  

FEBS Letters ◽  
2007 ◽  
Vol 581 (30) ◽  
pp. 5872-5878 ◽  
Author(s):  
Jozef Sevcik ◽  
Rostislav Skrabana ◽  
Radovan Dvorsky ◽  
Natalia Csokova ◽  
Khalid Iqbal ◽  
...  

2010 ◽  
Vol 132 (34) ◽  
pp. 11906-11907 ◽  
Author(s):  
Rhagavendran L. Narayanan ◽  
Ulrich H. N. Dürr ◽  
Stefan Bibow ◽  
Jacek Biernat ◽  
Eckhard Mandelkow ◽  
...  

2020 ◽  
Vol 118 (3) ◽  
pp. 561a
Author(s):  
Christine Tchounwou ◽  
Bretton Fletcher ◽  
Rebecca Best ◽  
Leslie Wilson ◽  
Stuart C. Feinstein ◽  
...  

2018 ◽  
Vol 20 (1) ◽  
pp. 690-693 ◽  
Author(s):  
Giuseppe Graziano

Chain compaction is favoured on raising the temperature because the entropy gain of water molecules due to the decrease in solvent-excluded volume increases with temperature.


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