scholarly journals Boundary Strength Analysis: Combining colour pattern geometry and coloured patch visual properties for use in predicting behaviour and fitness

2018 ◽  
Author(s):  
John A. Endler ◽  
Gemma L. Cole ◽  
Alexandrea Kranz
Keyword(s):  
Poecilia Reticulata ◽  
Colour Pattern ◽  
Strength Analysis ◽  
Noise Estimate ◽  
Darwinian Fitness ◽  
The Mean ◽  
Colour Patterns ◽  
Visual Properties ◽  
Colour Patch ◽  
Boundary Strength

AbstractColour patterns are used by many species to make decisions that ultimately affect their Darwinian fitness. Colour patterns consist of a mosaic of patches that differ in geometry and visual properties. Although traditionally pattern geometry and colour patch visual properties are analysed separately, these components are likely to work together as a functional unit. Despite this, the combined effect of patch visual properties, patch geometry, and the effects of the patch boundaries on animal visual systems, behaviour and fitness are relatively unexplored. Here we describe Boundary Strength Analysis (BSA), a novel way to combine the geometry of the edges (boundaries among the patch classes) with the receptor noise estimate (ΔS) of the intensity of the edges. The method is based upon known properties of vertebrate and invertebrate retinas. The mean and SD of ΔS (mΔS, sΔS) of a colour pattern can be obtained by weighting each edge class ΔS by its length, separately for chromatic and achromatic ΔS. This assumes those colour patterns, or parts of the patterns used in signalling, with larger mΔS and sΔS are more stimulating and hence more salient to the viewers. BSA can be used to examine both colour patterns and visual backgrounds. BSA was successful in assessing the estimated conspicuousness of colour pattern variants in two species, guppies (Poecilia reticulata) and Gouldian finches (Erythrura gouldiae), both polymorphic for patch colour, luminance and geometry. The pattern difference between chromatic and achromatic edges in both species reveals the possibility that chromatic and achromatic edges could function differently. BSA can be applied to any colour pattern used in intraspecific and interspecific behaviour. Seven predictions and four questions about colour patterns are presented.

scholarly journals Boundary strength analysis: Combining colour pattern geometry and coloured patch visual properties for use in predicting behaviour and fitness

2018 ◽  
Vol 9 (12) ◽  
pp. 2334-2348 ◽  
Author(s):  
John A. Endler ◽  
Gemma L. Cole ◽  
Alexandrea M. Kranz
Keyword(s):  
Colour Pattern ◽  
Strength Analysis ◽  
Visual Properties ◽  
Boundary Strength

Male phenotype and sperm number in the guppy (Poecilia reticulata)

2001 ◽  
Vol 79 (10) ◽  
pp. 1891-1896 ◽  
Author(s):  
Trevor E Pitcher ◽  
Jonathan P Evans
Keyword(s):  
Mate Choice ◽  
Mating Systems ◽  
Poecilia Reticulata ◽  
Mating Behaviour ◽  
Female Mate Choice ◽  
Colour Pattern ◽  
River Population ◽  
Female Mate ◽  
Male Phenotype ◽  
Colour Patterns

The idea that female mate choice might be adaptive is relatively easy to understand in species with resource-based mating systems in which females gain access to a territory, food, or other forms of parental care from the males with whom they mate. In contrast, the evolution of female mate choice in species exhibiting resource-free mating systems remains controversial. One such species in which males contribute nothing but sperm during mating is the guppy (Poecilia reticulata). Here, we examined whether female guppies can obtain information on male fertility (i.e., direct fertility benefits) via cues used during mate choice. Specifically, we examined whether male guppy colour patterns, body size, and mating behaviour signal their functional fertility, that is, their ability to supply a large number of sperm at copulation. We found significant correlations between male phenotype parameters and the number of sperm in male guppies originating from two wild Trinidadian populations. There were, however, significant interpopulation differences with respect to which traits were good predictors of sperm load. In the low-predation Paria River population, larger males and males with relatively more carotenoid colouration had significantly larger sperm loads, but mating behaviour (i.e., sigmoids) and melanin colouration were not good predictors of sperm load. In the high-predation Tacarigua River population, larger males, males that displayed more, and males with less yellow colouration had significantly more sperm, but other colour pattern components (area of orange and black colouration) were not good predictors of sperm load. Overall, our results suggest that there is the potential for direct fertility benefits through mate choice in the promiscuous, non-resource-based mating system of the guppy.

The effect of predator appetite, prey warning coloration and luminance on predator foraging decisions

Behaviour ◽  
2010 ◽  
Vol 147 (9) ◽  
pp. 1121-1143 ◽  
Author(s):  
Martin Stevens ◽  
Johanna Mappes ◽  
Siiri-Lii Sandre
Keyword(s):  
Methodological Approach ◽  
Luminance Contrast ◽  
Colour Pattern ◽  
Species Variation ◽  
Insect Larvae ◽  
Predator Attack ◽  
Aposematic Signals ◽  
Predator Foraging ◽  
Colour Patterns ◽  
Visual Properties

AbstractAposematic prey advertise their defence to visually hunting predators using conspicuous warning colouration. Established theory predicts that aposematic signals should evolve towards increased conspicuousness and similarity to enhance predator education. Contrary to theoretical expectations, there is often considerable within- and between-species variation in aposematic signals of animals sharing the same ecological niche, phylogeny and predators. This may be explained by varying responses of predators that weaken the selection pressure for a consistent signal. By presenting painted mealworm larvae as prey to great tits as predators we tested if different aposematic colour patterns have different values as a means of initial protection and learnt avoidance from predators, and how widely birds generalise their learnt avoidance to other colour patterns. We also investigated how the colour and luminance of the pattern elements affect predator attack decisions. Finally, we studied if hunger affects the predators' reaction to differently coloured prey. We found that similarity in colour was not crucial to the survival of aposematic prey, since learnt avoidance was not influenced by colour, and predators remembered and generalised widely in their learnt avoidance to other colours. We found that initial avoidance was, however, apparently influenced by luminance contrast. Interestingly, the predators' level of hunger was more important than the colour of the aposematic signal in determining birds' decisions to attack chemically-defended insect larvae. We discuss the implications of visual properties of prey colour pattern and predator appetite for the evolution of insect defences and warning signals. In addition we propose a methodological approach to effectively control for predator appetite in laboratory experiments.

scholarly journals A large and diverse autosomal haplotype is associated with sex-linked colour polymorphism in the guppy

2021 ◽  
Author(s):  
Josephine R Paris ◽  
James R Whiting ◽  
Mitchel J Daniel ◽  
Joan Ferrer Obiol ◽  
Paul J Parsons ◽  
...  
Keyword(s):  
Sexual Selection ◽  
Sexual Conflict ◽  
Poecilia Reticulata ◽  
Sex Chromosome ◽  
Colour Polymorphism ◽  
Colour Pattern ◽  
Whole Genome Sequencing Data ◽  
Source Population ◽  
Pattern Polymorphism ◽  
Colour Patterns

Colour polymorphism provides a tractable trait that can be harnessed to explore the evolution of sexual selection and sexual conflict. Male colour patterns of the Trinidadian guppy (Poecilia reticulata) are governed by both natural and sexual selection, and are typified by extreme pattern colour variation as a result of negative frequency dependent selection. Since guppy colour patterns are often inherited faithfully from fathers to sons, it has been historically presumed that colour genes are physically linked to sex determining loci as a supergene on the sex chromosome. Yet the actual identity and genomic location of the colour pattern genes has remained elusive. We phenotyped and genotyped four guppy Iso-Y lines, where colour was inherited along the patriline, but backcrossed into the stock population every 2 to 3 generations for 40 generations, thereby homogenising the genome at regions unrelated to colour. Using an unbiased phenotyping method to proportion colour pattern differences between and among the Iso-Y lines, we confirmed that the breeding design was successful in producing four distinct colour patterns. Our analysis of genome resequencing data of the four Iso-Y lines uncovered a surprising genetic architecture for colour pattern polymorphism. Genetic differentiation among Iso-Y lines was repeatedly associated with a large and diverse haplotype (~5Mb) on an autosome (LG1), not the sex chromosome (LG12). Moreover, the LG1 haplotype showed elevated linkage disequilibrium and exhibited evidence of sex-specific diversity when we examined whole-genome sequencing data of the natural source population. We hypothesise that colour pattern polymorphism is driven by Y-autosome epistasis, and conclude that predictions of sexual conflict should focus on incorporating the effects of epistasis in understanding complex adaptive architectures.

scholarly journals Habituation underpins preference for mates with novel phenotypes in the guppy

2019 ◽  
Vol 286 (1902) ◽  
pp. 20190435 ◽  
Author(s):  
M. J. Daniel ◽  
L. Koffinas ◽  
K. A. Hughes
Keyword(s):  
Genetic Diversity ◽  
Evolutionary Biology ◽  
Poecilia Reticulata ◽  
Spontaneous Recovery ◽  
Mating Preference ◽  
Colour Pattern ◽  
Sexual Signals ◽  
Trinidadian Guppy ◽  
Colour Patterns ◽  
Stimulus Specificity

Populations harbour enormous genetic diversity in ecologically important traits. Understanding the processes that maintain this variation is a long-standing challenge in evolutionary biology. Recent evidence indicates that a mating preference for novel sexual signals can be a powerful force maintaining genetic diversity. However, the proximate underpinnings of this preference, and its generality, remain unclear. Here, we test the hypothesis that preference for novel sexual signals is underpinned by habituation, a nearly ubiquitous form of learning whereby individuals become less responsive to repetitive stimuli. We use the Trinidadian guppy ( Poecilia reticulata ), in which male colour patterns are diverse yet heritable. We show that repeated exposure to males with a given colour pattern reduces female interest in males with that pattern, and that interest recovers following brief isolation. These results fulfil two core criteria of habituation: responsiveness decline and spontaneous recovery. To distinguish habituation from sensory adaptation and fatigue, we also demonstrate stimulus specificity and dishabituation. These results provide the first evidence that habituation causes a preference for novel sexual signals, addressing the mechanistic underpinnings of this mating preference. Given the pervasiveness of habituation among taxa and sensory contexts, our findings suggest that preference for novelty may play an underappreciated role in mate choice and the maintenance of genetic variation.

scholarly journals Quantitative Colour Pattern Analysis (QCPA): A Comprehensive Framework for the Analysis of Colour Patterns in Nature

2019 ◽  
Author(s):  
Cedric P. van den Berg ◽  
Jolyon Troscianko ◽  
John A. Endler ◽  
N. Justin Marshall ◽  
Karen L. Cheney
Keyword(s):  
Pattern Analysis ◽  
Digital Photography ◽  
Colour Pattern ◽  
Strength Analysis ◽  
List Type ◽  
Spatial Acuity ◽  
Visual Contrast ◽  
Colour Patterns ◽  
User Friendly ◽  
Receptor Noise

AbstractTo understand the function of colour signals in nature, we require robust quantitative analytical frameworks to enable us to estimate how animal and plant colour patterns appear against their natural background as viewed by ecologically relevant species. Due to the quantitative limitations of existing methods, colour and pattern are rarely analysed in conjunction with one another, despite a large body of literature and decades of research on the importance of spatiochromatic colour pattern analyses. Furthermore, key physiological limitations of animal visual systems such as spatial acuity, spectral sensitivities, photoreceptor abundances and receptor noise levels are rarely considered together in colour pattern analyses.Here, we present a novel analytical framework, called the ‘Quantitative Colour Pattern Analysis’ (QCPA). We have overcome many quantitative and qualitative limitations of existing colour pattern analyses by combining calibrated digital photography and visual modelling. We have integrated and updated existing spatiochromatic colour pattern analyses, including adjacency, visual contrast and boundary strength analysis, to be implemented using calibrated digital photography through the ‘Multispectral Image Analysis and Calibration’ (MICA) Toolbox.This combination of calibrated photography and spatiochromatic colour pattern analyses is enabled by the inclusion of psychophysical colour and luminance discrimination thresholds for image segmentation, which we call ‘Receptor Noise Limited Clustering’, used here for the first time. Furthermore, QCPA provides a novel psycho-physiological approach to the modelling of spatial acuity using convolution in the spatial or frequency domains, followed by ‘Receptor Noise Limited Ranked Filtering’ to eliminate intermediate edge artefacts and recover sharp boundaries following smoothing. We also present a new type of colour pattern analysis, the ‘Local Edge Intensity Analysis’ (LEIA) as well as a range of novel psycho-physiological approaches to the visualisation of spatiochromatic data.QCPA combines novel and existing pattern analysis frameworks into what we hope is a unified, user-friendly, free and open source toolbox and introduce a range of novel analytical and data-visualisation approaches. These analyses and tools have been seamlessly integrated into the MICA toolbox providing a dynamic and user-friendly workflow.QCPA is a framework for the empirical investigation of key theories underlying the design, function and evolution of colour patterns in nature. We believe that it is compatible with, but more thorough than, other existing colour pattern analyses.

scholarly journals Dog colour patterns explained by modular promoters of ancient canid origin

2021 ◽  
Author(s):  
Danika L. Bannasch ◽  
Christopher B. Kaelin ◽  
Anna Letko ◽  
Robert Loechel ◽  
Petra Hug ◽  
...  
Keyword(s):  
Colour Pattern ◽  
Hair Cycle ◽  
Temporal And Spatial Distribution ◽  
Multiple Alleles ◽  
Haplotype Combination ◽  
Regulatory Modules ◽  
Regulatory Module ◽  
Temporal And Spatial ◽  
Selection For ◽  
Colour Patterns

AbstractDistinctive colour patterns in dogs are an integral component of canine diversity. Colour pattern differences are thought to have arisen from mutation and artificial selection during and after domestication from wolves but important gaps remain in understanding how these patterns evolved and are genetically controlled. In other mammals, variation at the ASIP gene controls both the temporal and spatial distribution of yellow and black pigments. Here, we identify independent regulatory modules for ventral and hair cycle ASIP expression, and we characterize their action and evolutionary origin. Structural variants define multiple alleles for each regulatory module and are combined in different ways to explain five distinctive dog colour patterns. Phylogenetic analysis reveals that the haplotype combination for one of these patterns is shared with Arctic white wolves and that its hair cycle-specific module probably originated from an extinct canid that diverged from grey wolves more than 2 million years ago. Natural selection for a lighter coat during the Pleistocene provided the genetic framework for widespread colour variation in dogs and wolves.

Molecular phylogeny of Clibanarius Dana, 1852 from the Indo-West Pacific: evolution of pereopod colour pattern and habitat adaptation

Crustaceana ◽  
2019 ◽  
Vol 92 (7) ◽  
pp. 799-839 ◽  
Author(s):  
Akihiro Yoshikawa ◽  
Kazuho Ikeo ◽  
Junichi Imoto ◽  
Wachirah Jaingam ◽  
Lily Surayya Eka Putri ◽  
...  
Keyword(s):  
Histone H3 ◽  
Hermit Crabs ◽  
Colour Pattern ◽  
12S Rrna ◽  
Habitat Adaptation ◽  
Soft Sediments ◽  
Mitochondrial 12S Rrna ◽  
Nuclear Histone ◽  
Colour Patterns ◽  
Hard Substrates

Abstract Species of hermit crabs in the genus Clibanarius Dana, 1852 have adapted to various environments in the intertidal areas, including hard substrates and soft sediments. These species often bear a close morphological resemblance to each other, therefore, the colouration on the pereopods can be one of the reliable characteristics to distinguish the species. However, the evolutionary relationships among species with different colour patterns and relationships between colour patterns and habitat adaptation have not previously been investigated. Therefore, we reconstructed the phylogenetic relationships among 19 species of Clibanarius based on mitochondrial [12S rRNA, 16S rRNA and cytochrome oxidase I] and nuclear [histone H3] DNA markers. The results suggest that the striped and solid colour elements have evolved multiple times independently, with the ancestral colour pattern potentially being scattered, bright colour spots with a bright colour band. Our findings also suggest that evolutionary adaptation from hard substrates to mudflats and soft sediments may have occurred at least twice.

scholarly journals Sexually dimorphic dorsal coloration in a jumping spider: testing a potential case of sex-specific mimicry

2021 ◽  
Vol 8 (6) ◽  
pp. 210308
Author(s):  
Collette Cook ◽  
Erin C. Powell ◽  
Kevin J. McGraw ◽  
Lisa A. Taylor
Keyword(s):  
Colour Pattern ◽  
Sexually Dimorphic ◽  
Sham Control ◽  
Jumping Spider ◽  
Negative Results ◽  
Potential Case ◽  
Opposite Sex ◽  
Colour Patterns ◽  
Hymenopteran Insects ◽  
Predation Rates

To avoid predation, many animals mimic behaviours and/or coloration of dangerous prey. Here we examine potential sex-specific mimicry in the jumping spider Habronattus pyrrithrix . Previous work proposed that males' conspicuous dorsal coloration paired with characteristic leg-waving (i.e. false antennation) imperfectly mimics hymenopteran insects (e.g. wasps and bees), affording protection to males during mate-searching and courtship. By contrast, less active females are cryptic and display less leg-waving. Here we test the hypothesis that sexually dimorphic dorsal colour patterns in H. pyrrithrix are most effective when paired with sex-specific behaviours. We manipulated spider dorsal coloration with makeup to model the opposite sex and exposed them to a larger salticid predator ( Phidippus californicus ). We predicted that males painted like females should suffer higher predation rates than sham-control males. Likewise, females painted like males should suffer higher predation rates than sham-control females. Contrary to expectations, spiders with male-like coloration were attacked more than those with female-like coloration, regardless of their actual sex. Moreover, males were more likely to be captured, and were captured sooner, than females (regardless of colour pattern). With these unexpected negative results, we discuss alternative functional hypotheses for H. pyrrithrix colours, as well as the evolution of defensive coloration generally.

scholarly journals Scrapie-resistant sheep show certain coat colour characteristics

2009 ◽  
Vol 91 (1) ◽  
pp. 39-46 ◽  
Author(s):  
R. M. SAWALHA ◽  
L. BELL ◽  
S. BROTHERSTONE ◽  
I. WHITE ◽  
A. J. WILSON ◽  
...  
Keyword(s):  
Maximum Likelihood ◽  
Linear Model ◽  
Morphological Diversity ◽  
Coat Colour ◽  
Unintended Consequences ◽  
Colour Pattern ◽  
Reverse Pattern ◽  
Colour Patterns ◽  
Log Linear ◽  
The Relationship

SummarySusceptibility to scrapie is known to be associated with polymorphisms at the prion protein (PrP) gene, and this association is the basis of current selective programmes implemented to control scrapie in many countries. However, these programmes might have unintended consequences for other traits that might be associated withPrPgenotype. The objective of this study was to investigate the relationship betweenPrPgenotype and coat colour characteristics in two UK native sheep breeds valued for their distinctive coat colour patterns. Coat colour pattern, darkness and spotting andPrPgenotype records were available for 11 674 Badgerfaced Welsh Mountain and 2338 Shetland sheep. The data were analysed with a log–linear model using maximum likelihood. Results showed a strong significant association ofPrPgenotype with coat colour pattern in Badgerfaced Welsh Mountain and Shetland sheep and with the presence of white spotting in Shetland sheep. Animals with the ARR/ARR genotype (the most scrapie resistant) had higher odds of having a light dorsum and a dark abdomen than the reverse pattern. The implication of these associations is that selection to increase resistance to scrapie based only onPrPgenotype could result in change in morphological diversity and affect other associated traits such as fitness.

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