scholarly journals Moco Mojo: Crystal Structure Reveals Essential Features of Eukaryotic Assimilatory Nitrate Reduction

2005 ◽  
Vol 17 (4) ◽  
pp. 1029-1031 ◽  
Author(s):  
Nancy A. Eckardt
2020 ◽  
Vol 8 (10) ◽  
pp. 1529
Author(s):  
Ying Liu ◽  
Hongrui Ding ◽  
Yuan Sun ◽  
Yan Li ◽  
Anhuai Lu

The solar light response and photoelectrons produced by widespread semiconducting mineral play important roles in biogeochemical cycles on Earth’s surface. To explore the potential influence of photoelectrons generated by semiconducting mineral particles on nitrate-reducing microorganisms in the photic zone, a marine heterotrophic denitrifier Halomonas sp. strain 3727 was isolated from seawater in the photic zone of the Yellow Sea, China. This strain was classified as a Halomonadaceae. Whole-genome analysis indicated that this strain possessed genes encoding the nitrogen metabolism, i.e., narG, nasA, nirBD, norZ, nosB, and nxr, which sustained dissimilatory nitrate reduction, assimilatory nitrate reduction, and nitrite oxidation. This strain also possessed genes related to carbon, sulfur, and other metabolisms, hinting at its substantial metabolic flexibility. A series of microcosm experiments in a simulative photoelectron system was conducted, and the results suggested that this bacterial strain could use simulated photoelectrons with different energy for nitrate reduction. Nitrite, as an intermediate product, was accumulated during the nitrate reduction with limited ammonia residue. The nitrite and ammonia productions differed with or without different energy electron supplies. Nitrite was the main product accounting for 30.03% to 68.40% of the total nitrogen in photoelectron supplement systems, and ammonia accounted for 3.77% to 8.52%. However, in open-circuit systems, nitrite and ammonia proportions were 26.77% and 11.17%, respectively, and nitrogen loss in the liquid was not observed. This study reveals that photoelectrons can serve as electron donors for nitrogen transformation mediated by Halomonas sp. strain 3727, which reveals an underlying impact on the nitrogen biogeochemical cycle in the marine photic zone.


1983 ◽  
Vol 38 (7-8) ◽  
pp. 571-577 ◽  
Author(s):  
Hermann Bothe ◽  
Gislene Barbosa ◽  
Johanna Dobereiner

The O2- sensitivitiy of N2-fixation by the carotenoid forming strain Azospirillum brasilense Cd and the colourless strain Sp 7 is compared in the present communication. As no difference in the reaction is observed with both strains, it is concluded that carotenoids do not protect nitrogenase from damage by O2. Azospirillum spp. have also been shown to perform NO3-- dependent N2-fixation. The physiological properties of this reaction are described in more detail in the present communication. Evidence is presented that NO3-- dependent N2-fixation is a transitory reaction, proceeding only as long as the enzymes of assimilatory nitrate reduction are synthesized by the cells.


2020 ◽  
Vol 295 (33) ◽  
pp. 11455-11465 ◽  
Author(s):  
Julius Campeciño ◽  
Satyanarayana Lagishetty ◽  
Zdzislaw Wawrzak ◽  
Victor Sosa Alfaro ◽  
Nicolai Lehnert ◽  
...  

Cytochrome c nitrite reductase (NrfA) catalyzes the reduction of nitrite to ammonium in the dissimilatory nitrate reduction to ammonium (DNRA) pathway, a process that competes with denitrification, conserves nitrogen, and minimizes nutrient loss in soils. The environmental bacterium Geobacter lovleyi has recently been recognized as a key driver of DNRA in nature, but its enzymatic pathway is still uncharacterized. To address this limitation, here we overexpressed, purified, and characterized G. lovleyi NrfA. We observed that the enzyme crystallizes as a dimer but remains monomeric in solution. Importantly, its crystal structure at 2.55-Å resolution revealed the presence of an arginine residue in the region otherwise occupied by calcium in canonical NrfA enzymes. The presence of EDTA did not affect the activity of G. lovleyi NrfA, and site-directed mutagenesis of this arginine reduced enzymatic activity to <3% of the WT levels. Phylogenetic analysis revealed four separate emergences of Arg-containing NrfA enzymes. Thus, the Ca2+-independent, Arg-containing NrfA from G. lovleyi represents a new subclass of cytochrome c nitrite reductase. Most genera from the exclusive clades of Arg-containing NrfA proteins are also represented in clades containing Ca2+-dependent enzymes, suggesting convergent evolution.


1977 ◽  
Vol 23 (3) ◽  
pp. 306-310 ◽  
Author(s):  
Carlos A. Neyra ◽  
Peter Van Berkum

Nitrate and nitrite reduction under aerobic, microaerophillic, and anaerobic conditions was demonstrated in Spirillum lipoferum (ATCC 29145). Nitrite did not accumulate during assimilatory nitrate reduction in air. The nitrite produced during dissimilatory nitrate reduction accumulated in the medium but not in the cells. On exposure of the bacteria to nitrate and anaerobiosis, a low initial rate (lag) was followed by accelerated rates of nitrite accumulation. A 3-h anaerobic pretreatment, in the absence of nitrate, did not avoid the lag phase. No nitrate reductase activity (NRA) developed in the presence of chloramphenicol. The data suggest that induction of anaerobic NRA in S. lipoferum required nitrate and protein synthesis.Anaerobic N2ase activity by S. lipoferum was greatly stimulated in the presence of nitrate. The time course of nitrate reduction was coincidental with the pattern of nitrate-stimulated N2ase activity indicating that a relationship exists between these two processes.


2021 ◽  
Vol 10 (3) ◽  
Author(s):  
Claire Shaw ◽  
Charles Brooke ◽  
Angel Avalos ◽  
Matthew Blow ◽  
Nicole Shapiro ◽  
...  

Here, we report the restriction modification system of Nostoc punctiforme ATCC 29133, along with its methylated genome sequence, under contrasting nitrate availability. Generated methylation profiles revealed increased methylation for key enzymes of assimilatory nitrate reduction, suggesting that Nostoc punctiforme employs DNA methylation to regulate its nitrogen metabolism.


Planta ◽  
1988 ◽  
Vol 176 (1) ◽  
pp. 28-35 ◽  
Author(s):  
Elisabeth Kr�mer ◽  
Rudolf Tischner ◽  
Ahlert Schmidt

Extremophiles ◽  
2007 ◽  
Vol 11 (6) ◽  
pp. 759-767 ◽  
Author(s):  
Rosa María Martínez-Espinosa ◽  
Belén Lledó ◽  
Frutos C. Marhuenda-Egea ◽  
María José Bonete

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