Parallelizing molecular dynamics programs for distributed-memory machines

IEEE Computational Science and Engineering ◽

10.1109/99.388949 ◽

1995 ◽

Vol 2 (2) ◽

pp. 18-29 ◽

Author(s):

Ynan-Shin Hwang ◽

R. Das ◽

J.H. Saltz ◽

M. Hodoscek ◽

B.R. Brooks

Keyword(s):

Molecular Dynamics ◽

Distributed Memory ◽

Distributed Memory Machines

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A simple dynamic load-balancing scheme for parallel molecular dynamics simulation on distributed memory machines

High-Performance Computing and Networking - Lecture Notes in Computer Science ◽

10.1007/bfb0100587 ◽

1999 ◽

pp. 260-269 ◽

Author(s):

Naohito Sato ◽

Jean-Marc Jézéquel

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Load Balancing ◽

Dynamic Load ◽

Distributed Memory ◽

Dynamic Load Balancing ◽

Dynamics Simulation ◽

Distributed Memory Machines ◽

Parallel Molecular Dynamics

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A Parallel Algorithm for Nonequilibrium Molecular Dynamics Simulation of Shear Flow on Distributed Memory Machines

Molecular Simulation ◽

10.1080/08927029408022000 ◽

1994 ◽

Vol 13 (6) ◽

pp. 375-393 ◽

Author(s):

David P. Hansen ◽

Denis J. Evans

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Parallel Algorithm ◽

Distributed Memory ◽

Dynamics Simulation ◽

Nonequilibrium Molecular Dynamics ◽

Distributed Memory Machines ◽

Nonequilibrium Molecular Dynamics Simulation

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Molecular dynamics simulations on distributed memory machines

Computer Physics Communications ◽

10.1016/0010-4655(91)90021-c ◽

1991 ◽

Vol 67 (2) ◽

pp. 261-267 ◽

Author(s):

S.Y. Liem ◽

D. Brown ◽

J.H.R. Clarke

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Distributed Memory ◽

Distributed Memory Machines ◽

Dynamics Simulations

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A domain decomposition parallelization strategy for molecular dynamics simulations on distributed memory machines

Computer Physics Communications ◽

10.1016/0010-4655(93)90107-n ◽

1993 ◽

Vol 74 (1) ◽

pp. 67-80 ◽

Author(s):

David Brown ◽

Julian H.R. Clarke ◽

Motoi Okuda ◽

Takao Yamazaki

Keyword(s):

Molecular Dynamics ◽

Domain Decomposition ◽

Molecular Dynamics Simulations ◽

Distributed Memory ◽

Distributed Memory Machines ◽

Parallelization Strategy ◽

Dynamics Simulations

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Nonblocking Data Structures for Distributed-Memory Machines: Stacks as an Example

2021 29th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP) ◽

10.1109/pdp52278.2021.00012 ◽

2021 ◽

Author(s):

Thanh-Dang Diep ◽

Karl Furlinger

Keyword(s):

Data Structures ◽

Distributed Memory ◽

Distributed Memory Machines

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DIAGONAL-IMPLICITLY ITERATED RUNGE–KUTTA METHODS ON DISTRIBUTED MEMORY MACHINES

International Journal of High Speed Computing ◽

10.1142/s0129053399000090 ◽

1999 ◽

Vol 10 (02) ◽

pp. 185-207 ◽

Author(s):

THOMAS RAUBER ◽

GUDULA RÜNGER

Keyword(s):

Distributed Memory ◽

Distributed Memory Machines ◽

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Breaking the speed and scalability Barriers for Graph exploration on distributed-memory machines

2012 International Conference for High Performance Computing, Networking, Storage and Analysis ◽

10.1109/sc.2012.25 ◽

2012 ◽

Author(s):

Fabio Checconi ◽

Fabrizio Petrini ◽

Jeremiah Willcock ◽

Andrew Lumsdaine ◽

Anamitra Roy Choudhury ◽

...

Keyword(s):

Distributed Memory ◽

Graph Exploration ◽

Distributed Memory Machines

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Modeling the communication behavior of distributed memory machines by genetic programming

Euro-Par’98 Parallel Processing - Lecture Notes in Computer Science ◽

10.1007/bfb0057862 ◽

1998 ◽

pp. 273-278 ◽

Author(s):

L. Heinrich-Litan ◽

U. Fissgus ◽

St. Sutter ◽

P. Molitor ◽

Th. Rauber

Keyword(s):

Genetic Programming ◽

Distributed Memory ◽

Communication Behavior ◽

Distributed Memory Machines

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Optimal scheduling algorithm for distributed-memory machines

IEEE Transactions on Parallel and Distributed Systems ◽

10.1109/71.655248 ◽

1998 ◽

Vol 9 (1) ◽

pp. 87-95 ◽

Author(s):

S. Darbha ◽

D.P. Agrawal

Keyword(s):

Distributed Memory ◽

Scheduling Algorithm ◽

Optimal Scheduling ◽

Distributed Memory Machines

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Modifying the Cholesky Factorization on MIMD Distributed Memory Machines

Applied Optimization - High Performance Algorithms and Software in Nonlinear Optimization ◽

10.1007/978-1-4613-3279-4_9 ◽

1998 ◽

pp. 125-141 ◽

Author(s):

Marco D’Apuzzo ◽

Valentina De Simone ◽

Marina Marino ◽

Gerardo Toraldo

Keyword(s):

Distributed Memory ◽

Cholesky Factorization ◽

Distributed Memory Machines

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