A High performance cloud computing platform for mRNA analysis

Author(s):  
Feng-Seng Lin ◽  
Chia-Ping Shen ◽  
Hsiao-Ya Sung ◽  
Yan-Yu Lam ◽  
Jeng-Wei Lin ◽  
...  
2011 ◽  
Vol 121-126 ◽  
pp. 4023-4027 ◽  
Author(s):  
Guang Ming Li ◽  
Wen Hua Zeng ◽  
Jian Feng Zhao ◽  
Min Liu

The implementation platforms of parallel genetic algorithms (PGAs) include high performance computer, cluster and Grid. Contrast with the traditional platform, a Master-slave PGA based on MapReduce (MMRPGA) of cloud computing platform was proposed. Cloud computing is a new computer platform, suites for larger-scale computing and is low cost. At first, describes the design of MMRPGA, in which the whole evolution is controlled by Master and the fitness computing is assigned to Slaves; then deduces the theoretical speed-up of MMRPGA; at last, implements MMRPGA on Hadoop and compares the speed-up with traditional genetic algorithm, the experiment result shows MMRPGA can achieve slightly lower linear speed-up with Mapper’s number.


2012 ◽  
Vol 35 (6) ◽  
pp. 1262 ◽  
Author(s):  
Ke-Jiang YE ◽  
Zhao-Hui WU ◽  
Xiao-Hong JIANG ◽  
Qin-Ming HE

2020 ◽  
Vol 29 (2) ◽  
pp. 1-24
Author(s):  
Yangguang Li ◽  
Zhen Ming (Jack) Jiang ◽  
Heng Li ◽  
Ahmed E. Hassan ◽  
Cheng He ◽  
...  

Neuroforum ◽  
2021 ◽  
Vol 0 (0) ◽  
Author(s):  
Michael Hanke ◽  
Franco Pestilli ◽  
Adina S. Wagner ◽  
Christopher J. Markiewicz ◽  
Jean-Baptiste Poline ◽  
...  

Abstract Decentralized research data management (dRDM) systems handle digital research objects across participating nodes without critically relying on central services. We present four perspectives in defense of dRDM, illustrating that, in contrast to centralized or federated research data management solutions, a dRDM system based on heterogeneous but interoperable components can offer a sustainable, resilient, inclusive, and adaptive infrastructure for scientific stakeholders: An individual scientist or laboratory, a research institute, a domain data archive or cloud computing platform, and a collaborative multisite consortium. All perspectives share the use of a common, self-contained, portable data structure as an abstraction from current technology and service choices. In conjunction, the four perspectives review how varying requirements of independent scientific stakeholders can be addressed by a scalable, uniform dRDM solution and present a working system as an exemplary implementation.


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