In the paper, the fault-tolerant control strategy for the aero-engine electronic control system is researched based on the Model Reference Adaptive Control method. In the design process, a new reference model design method is proposed with the Raccatti equation, which can guarantee the reconfiguration system have satisfactory performance. According to the sensor failure models, the failure system mathematic model is given. Lyapunov stability theory was applied to obtain the adaptive control law through design a Lyapunov function, which can ensure the strictly positive realness and global asymptotic stability for the reconfiguration control system. For the typical sensor failures, the reconfiguration effect with the control strategy is simulated and verified in the Matlab, which revealed that the aero-engine control system could operate well under the failure with the fault-tolerant control.