Hyphae move matter and microbes to mineral microsites: Integrating the hyphosphere into conceptual models of soil organic matter stabilization

2022 ◽  
Author(s):  
Craig R. See ◽  
Adrienne B. Keller ◽  
Sarah E. Hobbie ◽  
Peter G. Kennedy ◽  
Peter K. Weber ◽  
...  
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Conceptual Models ◽  
Organic Matter Stabilization

scholarly journals Integrating plant litter quality, soil organic matter stabilization, and the carbon saturation concept

2015 ◽  
Vol 21 (9) ◽  
pp. 3200-3209 ◽  
Author(s):  
Michael J. Castellano ◽  
Kevin E. Mueller ◽  
Daniel C. Olk ◽  
John E. Sawyer ◽  
Johan Six
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Litter Quality ◽  
Plant Litter ◽  
Carbon Saturation ◽  
Organic Matter Stabilization

A molecular dynamic study of Soil Organic Matter stabilization mechanisms

2021 ◽  
Author(s):  
Edgar Galicia-Andrés ◽  
Yerko Escalona ◽  
Peter Grančič ◽  
Chris Oostenbrink ◽  
Daniel Tunega ◽  
...  
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Humic Substances ◽  
Clay Mineralogy ◽  
Metal Cations ◽  
Dense Matter ◽  
Chemical Degradation ◽  
Molecular Graphics ◽  
Organic Matter Stabilization ◽  
Reactive Surfaces

<p>It is well known that some fractions of soil organic matter (SOM) can resist to physical and (bio)chemical degradation which can be attributed to factors ranging from molecular properties to the preference for digesting other molecular species by microorganisms. Some mechanisms, by which organic matter is protected, are often referred to as: physical stabilization through microaggregation, chemical stabilization by formation of SOM-mineral aggregates, and biochemical stabilization through the formation of recalcitrant SOM.</p><p>Protection mechanisms are responsible for the accumulation process of organic carbon, reducing the exposure of organic matter and making it less vulnerable to microbial, enzymatic or chemical attacks. In these mechanisms, water molecular bridges and metal cation bridges play a key role. Cation bridges serve as aggregation sites on humic substances, forming dense matter, in comparison to systems where bridges are missing. This effect is enhanced in systems with cations at higher oxidation states.</p><p>By using the modeler tool developed in our group (Vienna Soil–Organic–Matter Modeler, VSOMM2) (Escalona et al., 2021), we generated aggregate models of humic substances at atomistic scale reflecting the diversity in composition, size and conformations of the constituting molecules. Further, we built models of organo-clay aggregates using kaolinite and montmorillonite as typical soil minerals. This allowed a systematic study to understand the effect of the surrounding environment at microscopic scale, not fully accessible experimentally.</p><p>Molecular simulations of the adsorption process of SOM aggregates on the reactive surfaces of led to two observations: 1) the humic substances aggregates were able to interact with the reactive surfaces mainly via hydrogen bonds forming stable organic matter-clay complexes and 2) the aggregates subsequently lost rigidity and stability after metal cations removing, consequently leading to a gradual loss of humic substance molecules, evidencing the role of metal cations in the protection mechanism of soil organic matter aggregates and possibly explaining its recalcitrance (Galicia-Andrés et al., 2021).</p><p>References</p><ul><li>Escalona, Y., Petrov, D., & Oostenbrink, C. (2021). Vienna soil organic matter modeler 2 (VSOMM2). Journal of Molecular Graphics and Modelling, 103, 107817. https://doi.org/10.1016/j.jmgm.2020.107817</li> <li>Galicia-Andrés, E., Grančič, P., Gerzabek, M. H., Oostenbrink, C., & Tunega, D. (2021). Modeling of interactions in natural and synthetic organoclays. In I. C. Sainz Diaz (Ed.), Computational modeling in clay mineralogy.</li> </ul>

scholarly journals Biological and physicochemical processes and control of soil organic matter stabilization and turnover

2006 ◽  
Vol 57 (4) ◽  
pp. 425-425 ◽  
Author(s):  
Ingrid Kögel-Knabner ◽  
Claire Chenu ◽  
Ellen Kandeler ◽  
Alessandro Piccolo
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Physicochemical Processes ◽  
Organic Matter Stabilization ◽  
And Control

Soil organic matter in soils of the Russian Arctic: insights from 13C-NMR spectroscopy

2020 ◽  
Author(s):  
Ivan Alekseev ◽  
Evgeny Abakumov
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Organic Carbon ◽  
Humic Acids ◽  
13C Nmr ◽  
Cold Climate ◽  
Molecular Organization ◽  
Cold Temperatures ◽  
Organic Matter Stabilization ◽  
Global Carbon

<p>Polar soils play a key role in global carbon circulation and stabilization as they contain maximum stocks of soil organic matter (SOM) within the whole pedosphere. Cold climate and active layer dynamics result in the stabilization of essential amounts of organic matter in soils, biosediments, and grounds of the polar biome. Chemical composition of soil organic carbon (SOC) determines its decomposability and may affect soil organic matter stabilization (SOM) rate (Beyer, 1995). This is quite important for understanding variability in SOC pools and stabilization rate in context of changes in plant cover or climate (Rossi et al. 2016). <sup>13</sup>C nuclear magnetic resonance spectroscopy, which provides detailed information on diversity of structural composition of humic acids and SOM, may also be used to study the SOM dynamics under decomposition and humification proceses (Kogel-Knabner, 1997; Zech et al., 1997). This study aims to characterize molecular organization of the humic acids, isolated from various permafrost-affected soils of Yamal region and to assess the potential vulnerability of soils organic matter in context of possible mineralization processes. Organic carbon stocks for studied area were 7.85 ± 2.24 kg m-2 (for 0-10 cm layer), 14.97 ± 5.53 kg m-2 (for 0-30 cm), 23.99 ± 8.00 kg m-2 (for 0-100 cm). Results of solid-state 13C-NMR spectrometry showed low amounts of aromatic components in studied soils. All studied humic powders are characterized by predominance of aliphatic structures, and also carbohydrates, polysaccharides, ethers and amino acids. High content of aliphatic fragments in studied humic acids shows their similarity fulvic acids. Low level of aromaticity reflects the accumulation in soil of lowly decomposed organic matter due to cold temperatures. Our results provide further evidence of high vulnerability and sensitivity of permafrost-affected soils organic matter to Arctic warming. Consequently, these soils may play a crucial role in global carbon balance under effects of climate warming.</p>

Soil organic matter stabilization in acidic forest soils is preferential and soil type-specific

2008 ◽  
Vol 59 (4) ◽  
pp. 674-692 ◽  
Author(s):  
S. Spielvogel ◽  
J. Prietzel ◽  
I. Kgel-Knabner
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Forest Soils ◽  
Soil Type ◽  
Organic Matter Stabilization

Soil organic matter stabilization at the pluri-decadal scale: Insight from bare fallow soils with contrasting physicochemical properties and macrostructures

Geoderma ◽  
2016 ◽  
Vol 275 ◽  
pp. 48-54 ◽  
Author(s):  
Remigio Paradelo ◽  
Folkert van Oort ◽  
Pierre Barré ◽  
Daniel Billiou ◽  
Claire Chenu
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Physicochemical Properties ◽  
Organic Matter Stabilization ◽  
Decadal Scale ◽  
Bare Fallow

scholarly journals Role of Earthworms in Soil Fertility Maintenance through the Production of Biogenic Structures

2010 ◽  
Vol 2010 ◽  
pp. 1-7 ◽  
Author(s):  
Tunira Bhadauria ◽  
Krishan Gopal Saxena
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Management Practices ◽  
Soil Productivity ◽  
Published Data ◽  
Critical Function ◽  
Water Excretion ◽  
Organic C ◽  
Organic Matter Stabilization ◽  
Biogenic Structures

The soil biota benefits soil productivity and contributes to the sustainable function of all ecosystems. The cycling of nutrients is a critical function that is essential to life on earth. Earthworms (EWs) are a major component of soil fauna communities in most ecosystems and comprise a large proportion of macrofauna biomass. Their activity is beneficial because it can enhance soil nutrient cycling through the rapid incorporation of detritus into mineral soils. In addition to this mixing effect, mucus production associated with water excretion in earthworm guts also enhances the activity of other beneficial soil microorganisms. This is followed by the production of organic matter. So, in the short term, a more significant effect is the concentration of large quantities of nutrients (N, P, K, and Ca) that are easily assimilable by plants in fresh cast depositions. In addition, earthworms seem to accelerate the mineralization as well as the turnover of soil organic matter. Earthworms are known also to increase nitrogen mineralization, through direct and indirect effects on the microbial community. The increased transfer of organic C and N into soil aggregates indicates the potential for earthworms to facilitate soil organic matter stabilization and accumulation in agricultural systems, and that their influence depends greatly on differences in land management practices. This paper summarises information on published data on the described subjects.

Soil organic matter stabilization pathways in clay sub-fractions from a time series of fertilizer deprivation

2005 ◽  
Vol 36 (9) ◽  
pp. 1311-1322 ◽  
Author(s):  
Corinna Mertz ◽  
Markus Kleber ◽  
Reinhold Jahn
Keyword(s):  
Time Series ◽  
Organic Matter ◽  
Soil Organic Matter ◽  
Organic Matter Stabilization
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