Topographic Analysis of Intertidal Polychaete Reefs (Sabellaria alveolata) at a Very High Spatial Resolution

In temperate coastal regions of Western Europe, the polychaete Sabellaria alveolata (Linné) builds large intertidal reefs of several hectares on soft-bottom substrates. These reefs are protected by the European Habitat Directive EEC/92/43 under the status of biogenic structures hosting a high biodiversity and providing ecological functions such as protection against coastal erosion. As an alternative to time-consuming field campaigns, a UAV-based Structure-from-Motion photogrammetric survey was carried out in October 2020 over Noirmoutier Island (France) where the second-largest known European reef is located in a tidal delta. A DJI Phantom 4 Multispectral UAV provided a topographic dataset at very high resolutions of 5 cm/pixel for the Digital Surface Model (DSM) and 2.63 cm/pixel for the multispectral orthomosaic images. The reef footprint was mapped using a combination of two topographic indices: the Topographic Openness Index and the Topographic Position Index. The reef structures covered an area of 8.15 ha, with 89% corresponding to the main reef composed of connected and continuous biogenic structures, 7.6% of large isolated structures (<60 m2), and 4.4% of small isolated reef clumps (<2 m2). To further describe the topographic complexity of the reef, the Geomorphon landform classification was used. The spatial distribution of tabular platforms considered as a healthy stage of the reef in contrast to a degraded stage was mapped with a proxy that consists in comparing the reef volume to a theoretical tabular-shaped reef volume. Epibionts colonizing the reef (macroalgae, mussels, and oysters) were also mapped by combining multispectral indices such as the Normalised Difference Vegetation Index and simple band ratios with topographic indices. A confusion matrix showed that macroalgae and mussels were satisfactorily identified but that oysters could not be detected by an automated procedure due to their spectral complexity. The topographic indices used in this work should now be further exploited to propose a health index for these large intertidal reefs.

MARINE HARDBOTTOM ENVIRONMENTS IN THE BEACHES OF CEARÁ STATE, EQUATORIAL COAST OF BRAZIL

This paper is a literature review on marine hardbottom environments (MHE) that emerge in coastal regions in the Brazilian state of Ceará. This stretch of the Brazilian coast houses several rock formations, which are widely distributed in the intertidal zone. These formations have various origins and composition, ranging from crystalline rocks to biogenic structures, but most are composed by sandstones. These substrates support biodiverse ecosystems that produce valuable environmental goods and services, which have historical and socioeconomic relevance for the state. Despite their importance, they are currently threatened by various types of local and global stressors, and a consistent government effort to protect them is still lacking. There are many knowledge gaps regarding these formations and new studies are needed to support conservation actions involving these ecosystems. Keywords: reef, beachrock, sandstone, intertidal zone, benthos

Sediment shell-content diminishes current-driven sand ripple development and migration

Shells and shell fragments are biogenic structures that are widespread throughout natural sandy shelf seas and whose presence can affect the bed roughness and erodibility of the seabed. An important and direct consequence is the effect on the formation and movement of small bedforms such as sand ripples. We experimentally measured ripple formation and the migration of a mixture of natural sand with increasing volumes of shell material in a racetrack flume. Our experiments reveal the impacts of shells on ripple development in sandy sediment, providing information that was previously lacking. Shells expedite the onset of sediment transport while simultaneously reducing ripple dimensions and slowing down their migration rates. Moreover, increasing shell content enhances near-bed flow velocity due to the reduction of bed friction that is partly caused by a decrease in average ripple size and occurrence. This, in essence, limits the rate and magnitude of bed load transport. Given the large influence of shell content on sediment dynamics as well as the high shell concentrations found naturally in the sediments of shallow seas, a significant control from shells on the morphodynamics of sandy marine habitats is expected.

Jaws of Platynereis dumerilii: Miniature Biogenic Structures with Hardness Properties Similar to Those of Crystalline Metals

Nanoindentation, laser ablation inductively coupled plasma mass spectroscopy and weighing ion-spiked organic matrix standards revealed structure-property relations in the microscopic jaw structures of a cosmopolitan bristle worm, Platynereis dumerilii. Hardness and elasticity values in the jaws’ tip region, exceeding those in the center region, can be traced back to more metal and halogen ions built into the structural protein matrix. Still, structure size appears as an even more relevant factor governing the hardness values measured on bristle worm jaws across the genera Platynereis, Glycera and Nereis. The square of the hardness scales with the inverse of the indentation depth, indicating a Nix-Gao size effect as known for crystalline metals. The limit hardness for the indentation depth going to infinity, amounting to 0.53 GPa, appears to be an invariant material property of the ion-spiked structural proteins likely used by all types of bristle worms. Such a metal-like biogenic material is a major source of bio-inspiration.

Sediment shell-content diminishes current-driven sand ripple development and migration

Shells and shell fragments are biogenic structures that are widespread throughout natural sandy shelf seas and whose presence can affect the bed roughness and erodibility of the seabed. An important and direct consequence is the effect on the formation and movement of small bedforms such as sand ripples. We experimentally measured ripple formation and migration of a mixture of natural sand with increasing volumes of shell material in a racetrack flume. Our experiments reveal the impacts of shells on ripple development in sandy sediment, providing information that was previously lacking. Shells expedite the onset of sediment transport while simultaneously reducing ripple dimensions and slowing down their migration rates. Moreover, increasing shell content enhances near-bed flow velocity due to the reduction of bed friction that is partly caused by a decrease in average ripple size and occurrence. This, in essence, limits the rate and magnitude of bedload transport. Given the large influence of shell content on sediment dynamics on the one hand, and the high shell concentrations found naturally in the sediments of shallow seas on the other hand, a significant control from shells on the morphodynamics of sandy marine habitats is expected.

Biogenic structures in soils under a primary Atlantic Rain Forest in SE-Brazil

As minhocas desempenham papeis importantes na formação do solo, contudo pouca atenção é dada à bioturbação pelos pedólogos. A descrição morfológica tradicional, assim como os procedimentos de caracterização física e química do solo, não contemplam as estruturas biogênicas, que nem mesmo são consideradas pelo Sistema Brasileiro de Classificação de Solos. O objetivo deste trabalho foi caracterizar as feições biogênicas como canais, câmaras e dejeções, produzidas pela atividade de minhocas no solo da Estação Biológica de Boracéia, em São Paulo. As bioestruturas foram coletadas, medidas, fotografadas e organizadas por tipo (cilíndricos e blocos irregulares) e tamanho (muito pequeno, pequeno, médio, grande e muito grande). Foram realizadas análises físicas e químicas destes materiais e do solo: granulometria, carbono orgânico, bases trocáveis (Ca2+, Mg2+, K+, P). Alguns canais biogênicos encontravam-se preenchidos por solo revolvido (as crotovinas) e outros não. As características redoximórficas são muito comuns nas paredes dos canais, porque esses dutos biogênicos contribuem para a difusão de O2 do solo e a remoção de CO2 no perfil. As dejeções têm textura arenosa, o conteúdo de carbono orgânico nelas é três vezes superior comparado ao da matriz do solo, indicando a eficiência de certos grupos ecológicos de anelídeos na incorporação de matéria orgânica em subsuperfície. Os coprólitos também apresentaram maiores quantidades de fósforo, cálcio e magnésio do que o solo. As minhocas cumprem funções fundamentais no solo, como aeração, agregação, incorporação de matéria orgânica e aumento de sua fertilidade. Portanto, os agregados biogênicos influenciam fortemente na pedogênese, especialmente na zona tropical.

Exceptional sulfur and iron isotope enrichment in millimetre-sized, early Palaeozoic animal burrows

Pyrite-δ34S and -δ56Fe isotopes represent highly sensitive diagnostic paleoenvironmental proxies that express high variability at the bed (< 10 mm) scale that has so far defied explanation by a single formative process. This study reveals for the first time the paleoenvironmental context of exceptionally enriched pyrite-δ34S and -δ56Fe in bioturbated, storm-reworked mudstones of an early Ordovician storm-dominated delta (Tremadocian Beach Formation, Bell Island Group, Newfoundland). Very few studies provide insight into the low-temperature sulfur and iron cycling from bioturbated muddy settings for time periods prior to the evolution of deep soil horizons on land. Secondary ion mass spectroscopy (SIMS) analyses performed on Beach Formation muddy storm event beds reveal spatially distinct δ34S and δ56Fe values in: (a) tubular biogenic structures and trails (δ34S ~ +40‰; δ56Fe ~ −0.5‰), (b) silt-filled Planolites burrows (δ34S ~ +40‰; δ56Fe ~ +0.5 to + 2.1‰), and (c) non-bioturbated mudstone (δ34S ~ +35‰; δ56Fe ~ +0.5‰). δ34S values of well above + 40.0‰ indicate at least some pyrite precipitation in the presence of a 34S-depleted pore water sulfide reservoir, via closed system (Raleigh-type) fractionation. The preferential enrichment of 56Fe in Planolites burrows is best explained via microbially-driven liberation of Fe(II) from solid iron parent phases and precipitation from a depleted 54Fe dissolved Fe(II) reservoir. Rigorous sedimentological analysis represents a gateway to critically test the paleoenvironmental models describing the formation of a wide range of mudstones and elucidates the origins of variability in the global stable S and Fe isotope record.

Finding Fossil Footprints in the Archival Record: Case Studies from the Archaeological Site of Melka Kunture (Upper Awash, Ethiopia)

In this paper I discuss the potential of archival research (i.e. the reassessment of pictures and drawings) for the identification of hitherto overlooked fossil footprints. All of the most important sites of the Pleistocene sequence of Melka Kunture (Upper Awash Valley, Ethiopia) showed evidence of biogenic structures that had escaped attention during the archaeological investigations which started in the 1960s. The case studies described here show that fossil footprints at Melka Kunture occur more frequently than expected. This could encourage archaeologists to be more aware of the possible presence of bioturbated layers in other archaeological contexts and plan specific research accordingly, using Melka Kunture as a reference.