Deep 3D Convolution Neural Network Methods for Brain White Matter Hybrid Computational Simulations

2021 ◽  
Author(s):  
Assimina Pelegri ◽  
Xuehai Wu
Author(s):  
Xuehai Wu ◽  
Assimina A. Pelegri

Abstract Material properties of brain white matter (BWM) show high anisotropy due to the complicated internal three-dimensional microstructure and variant interaction between heterogeneous brain-tissue (axon, myelin, and glia). From our previous study, finite element methods were used to merge micro-scale Representative Volume Elements (RVE) with orthotropic frequency domain viscoelasticity to an integral macro-scale BWM. Quantification of the micro-scale RVE with anisotropic frequency domain viscoelasticity is the core challenge in this study. The RVE behavior is expressed by a viscoelastic constitutive material model, in which the frequency-related viscoelastic properties are imparted as storage modulus and loss modulus for the composite comprised of axonal fibers and extracellular glia. Using finite elements to build RVEs with anisotropic frequency domain viscoelastic material properties is computationally very consuming and resource-draining. Additionally, it is very challenging to build every single RVE using finite elements since the architecture of each RVE is arbitrary in an infinite data set. The architecture information encoded in the voxelized location is employed as input data and is consequently incorporated into a deep 3D convolution neural network (CNN) model that cross-references the RVEs’ material properties (output data). The output data (RVEs’ material properties) is calculated in parallel using an in-house developed finite element method, which models RVE samples of axon-myelin-glia composites. This novel combination of the CNN-RVE method achieved a dramatic reduction in the computation time compared with directly using finite element methods currently present in the literature.


Author(s):  
R. Kalpana ◽  
S. Muttan ◽  
B. Agrawala

Diffusion Tensor Magnetic Resonance Imaging (DTMRI) has proved useful for microstructure characterization of the brain. This technique also helps determining complex connectivity of fiber tracts. The brain white matter (BMW) changes with respect to age and corresponding appearance of white-matter lesions among the brain’s message-carrying axons affects cognitive functions in old age. In this paper, the observed morphology in BWM on ageing is analyzed using statistical parameters extracted from DTMR images of different age groups. The gray level co-occurrence matrix (GLCM) obtained from the segmented images gives 14 textural features, subsets of which are adopted as the input sets in a backpropagation neural network classifier. The network is trained to predict the age based on BMW details used as the inputs. The proposed method helps in understanding the age-related changes in white matter. This is useful for the physician in understanding miscorrelation in motor activities and relevant causes in elderly subjects.


Author(s):  
R. Kalpana ◽  
S. Muttan ◽  
B. Agrawala

Diffusion Tensor Magnetic Resonance Imaging (DTMRI) has proved useful for microstructure characterization of the brain. This technique also helps determining complex connectivity of fiber tracts. The brain white matter (BMW) changes with respect to age and corresponding appearance of white-matter lesions among the brain’s message-carrying axons affects cognitive functions in old age. In this paper, the observed morphology in BWM on ageing is analyzed using statistical parameters extracted from DTMR images of different age groups. The gray level co-occurrence matrix (GLCM) obtained from the segmented images gives 14 textural features, subsets of which are adopted as the input sets in a backpropagation neural network classifier. The network is trained to predict the age based on BMW details used as the inputs. The proposed method helps in understanding the age-related changes in white matter. This is useful for the physician in understanding miscorrelation in motor activities and relevant causes in elderly subjects.


1998 ◽  
Vol 49 (7) ◽  
pp. 717-722 ◽  
Author(s):  
M C M de Carvalho ◽  
M S Dougherty ◽  
A S Fowkes ◽  
M R Wardman

Sign in / Sign up

Export Citation Format

Share Document