scholarly journals Draft Genome Sequence of Microdochium bolleyi , a Dark Septate Fungal Endophyte of Beach Grass

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Aaron S. David ◽  
Sajeet Haridas ◽  
Kurt LaButti ◽  
Joanne Lim ◽  
Anna Lipzen ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Fungal Endophyte ◽  
Draft Genome Sequence ◽  
Microdochium Bolleyi

Here, we present the genome sequence of the dark septate fungal endophyte Microdochium bolleyi ( Ascomycota, Sordariomycetes, Xylariales ). The assembled genome size was 38.84 Mbp and consisted of 173 scaffolds and 13,177 predicted genes.

scholarly journals Genome Sequence of Clostridium botulinum Strain Adk2012 Associated with a Foodborne Botulinum Case in Tottori, Japan, in 2012

2017 ◽  
Vol 5 (34) ◽  
Author(s):  
Hiroshi Asakura ◽  
Shiori Yamamoto ◽  
Yoshika Momose ◽  
Haru Kato ◽  
Masaaki Iwaki ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Clostridium Botulinum ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Foodborne Botulism

ABSTRACT We report here a draft genome sequence of Clostridium botulinum Adk2012 responsible for a foodborne botulism case that occurred in Tottori, Japan, in 2012. Its genome size was 2,904,173 bp, with 46 rRNAs and 54 tRNAs, at a coverage of 14.5×.

scholarly journals Draft Genome Sequence of a Red Basidiomycete Yeast, Symmetrospora coprosmae Strain UCD350, Isolated from Soil in Ireland

2019 ◽  
Vol 8 (44) ◽  
Author(s):  
Jameela Almasoud ◽  
Laoise McArdle ◽  
Ryan Henne ◽  
Karen Mathews ◽  
Ísla O’Connor ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Red Yeast

Symmetrospora coprosmae is a red yeast from the subphylum Pucciniomycotina in the phylum Basidiomycota. Here, we present the first genome sequence of S. coprosmae strain UCD350, from an isolate collected from soil in Ireland. The genome size is 20.2 Mb.

scholarly journals Draft Genome Sequence of Lactobacillus sakei Strain FBL1, a Probiotic Bacterium Isolated from Mukeunji , a Long-Fermented Kimchi, in South Korea

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Jae-Hwan Kim ◽  
Eiseul Kim ◽  
Chang-Gyeom Kim ◽  
Dong-Won Choo ◽  
Hae-Yeong Kim
Keyword(s):  
South Korea ◽  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Probiotic Bacterium ◽  
Draft Genome Sequence ◽  
Lactobacillus Sakei

This report describes the 2,032,158-bp draft genome sequence of Lactobacillus sakei ( L. sakei ) strain FBL1, isolated from mukeunji purchased at the Gwangju World Kimchi Culture Festival in 2012, South Korea. The total draft genome size was 2,032,158 bp with a G+C content of 41.2%.

scholarly journals Draft Genome Sequence of Alternaria alternata JS-1623, a Fungal Endophyte of Abies koreana

Mycobiology ◽  
2020 ◽  
Vol 48 (3) ◽  
pp. 240-244
Author(s):  
Sook-Young Park ◽  
Jongbum Jeon ◽  
Jung A. Kim ◽  
Mi Jin Jeon ◽  
Min-Hye Jeong ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Alternaria Alternata ◽  
Draft Genome ◽  
Fungal Endophyte ◽  
Draft Genome Sequence ◽  
Abies Koreana

scholarly journals Draft Genome Sequence of Filamentous Fungus Phialemoniopsis curvata, Isolated from Diesel Fuel

2019 ◽  
Vol 8 (30) ◽  
Author(s):  
Vanessa A. Varaljay ◽  
Wanda J. Lyon ◽  
Audra L. Crouch ◽  
Carrie A. Drake ◽  
Jeffrey M. Hollomon ◽  
...  
Keyword(s):  
Fatty Acid ◽  
Genome Size ◽  
Genome Sequence ◽  
Diesel Fuel ◽  
Filamentous Fungus ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Beta Oxidation ◽  
Content Type

Phialemoniopsis curvata D216 is a filamentous fungus isolated from contaminated diesel fuel. The genome size is 40.3 Mbp with a G+C content of 54.81%. Its genome encodes enzymes and pathways likely involved in the degradation of and survival in fuel, including lipases, fatty acid transporters, and beta oxidation.

scholarly journals Improved De Novo Draft Genome Sequence of the Nocavionin-Producing Type Strain Nocardia terpenica IFM 0706 and Comparative Genomics with the Closely Related Strain Nocardia terpenica IFM 0406

2020 ◽  
Vol 9 (34) ◽  
Author(s):  
Anina Buchmann ◽  
Harald Gross
Keyword(s):  
Comparative Genomics ◽  
Genome Size ◽  
Genome Sequence ◽  
Type Strain ◽  
De Novo ◽  
Draft Genome ◽  
Pathogenic Strain ◽  
Draft Genome Sequence ◽  
Related Strain ◽  
Content Type

ABSTRACT We report an improved de novo draft genome sequence of the human-pathogenic strain Nocardia terpenica IFM 0706T. The resequencing unveiled that the genome size is larger than anticipated, reducing significantly the number of contigs and building a basis for comparison with the closely related strain N. terpenica IFM 0406.

scholarly journals Draft Genome Sequence of Desulfovibrio BerOc1, a Mercury-Methylating Strain

2017 ◽  
Vol 5 (3) ◽  
Author(s):  
Marisol Goñi Urriza ◽  
Claire Gassie ◽  
Oliver Bouchez ◽  
Christophe Klopp ◽  
Rémy Guyoneaud
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Mediterranean Coast ◽  
Draft Genome Sequence ◽  
Mercury Methylation ◽  
Sulfate Reducing

ABSTRACT Desulfovibrio BerOc1 is a sulfate-reducing bacterium isolated from the Berre lagoon (French Mediterranean coast). BerOc1 is able to methylate and demethylate mercury. The genome size is 4,081,579 bp assembled into five contigs. We identified the hgcA and hgcB genes involved in mercury methylation, but not those responsible for mercury demethylation.

scholarly journals Draft Genome Sequence of Rummeliibacillus sp. Strain TYF005, a Physiologically Recalcitrant Bacterium with High Ethanol and Salt Tolerance Isolated from Spoilage Vinegar

2019 ◽  
Vol 8 (31) ◽  
Author(s):  
Min Li ◽  
Yao Li ◽  
Xiaojun Fan ◽  
Yuhong Qin ◽  
Yongji He ◽  
...  
Keyword(s):  
Salt Tolerance ◽  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Gc Content ◽  
Thermophilic Bacterium ◽  
Draft Genome Sequence ◽  
Content Type ◽  
High Ethanol

Rummeliibacillus sp. strain TYF005 is a thermophilic bacterium with high ethanol (8% vol/vol) and salt (13% wt/vol) tolerance that was isolated from spoilage vinegar. Here, we report the draft genome sequence of this strain, which has 117 scaffolds with a total genome size of 3.7 Mb and a 34.4% GC content.

scholarly journals Draft Genome Sequence of Agrobacterium deltaense Strain CNPSo 3391, Isolated from a Soybean Nodule in Mozambique

2019 ◽  
Vol 8 (10) ◽  
Author(s):  
Anderson José Scherer ◽  
Jakeline Renata Marçon Delamuta ◽  
Renan Augusto Ribeiro ◽  
Amaral Machaculeha Chibeba ◽  
Stephen Kyei-Boahen ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Soybean Nodule

Agrobacterium deltaense strain CNPSo 3391 was isolated from a soybean nodule in Mozambique. Its genome size was estimated at 4,926,588 bp.

scholarly journals Draft Genome Sequence of the Extremely Desiccation-Tolerant Cyanobacterium Gloeocapsopsis sp. Strain AAB1

2018 ◽  
Vol 6 (17) ◽  
Author(s):  
Fernando Puente-Sánchez ◽  
Carlos González-Silva ◽  
Victor Parro ◽  
Javier Tamames ◽  
Armando Azua-Bustos
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Dna Sequences ◽  
Draft Genome ◽  
Atacama Desert ◽  
Draft Genome Sequence ◽  
Rrna Genes ◽  
Trna Genes ◽  
Content Type

ABSTRACT Gloeocapsopsis sp. strain AAB1 is an extremely desiccation-tolerant cyanobacterium isolated from translucent quartz stones from the Atacama Desert (Chile). Here, we report its draft genome sequence, which consists of 137 contigs with an ∼5.4-Mb genome size. The annotation revealed 5,641 coding DNA sequences, 38 tRNA genes, and 5 rRNA genes.

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