scholarly journals Complete Genome Sequence of Achromobacter denitrificans PR1

2017 ◽  
Vol 5 (31) ◽  
Author(s):  
Ana C. Reis ◽  
Kevin Kroll ◽  
Margarita Gomila ◽  
Boris A. Kolvenbach ◽  
Philippe F. X. Corvini ◽  
...  
Keyword(s):  
Energy Source ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Enrichment Culture ◽  
Illumina Miseq ◽  
Content Type ◽  
Oxford Nanopore

ABSTRACT Achromobacter denitrificans strain PR1 was isolated from an enrichment culture able to use sulfamethoxazole as an energy source. Here, we describe the complete genome of this strain sequenced by Illumina MiSeq and Oxford Nanopore MinION.

scholarly journals Complete Genome Sequence of Staphylococcus arlettae Strain P2, Isolated from a Laboratory Environment

2019 ◽  
Vol 8 (45) ◽  
Author(s):  
Hiroki Yu ◽  
Makoto Taniguchi ◽  
Kazuma Uesaka ◽  
Apirak Wiseschart ◽  
Kusol Pootanakit ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Hybrid Approach ◽  
Illumina Miseq ◽  
Sequencing Data ◽  
Content Type ◽  
Short Read Sequencing ◽  
Oxford Nanopore ◽  
Long Read

Staphylococcus arlettae is one coagulase-negative species in the bacterial genus Staphylococcus. Here, we describe the closed complete genome sequence of S. arlettae strain P2, which was obtained using a hybrid approach combining Oxford Nanopore long-read and Illumina MiSeq short-read sequencing data.

scholarly journals Complete Genome Sequence of Peptacetobacter (Clostridium) hiranonis Strain DGF055142, Isolated from Dog Feces from Flagstaff, Arizona, USA, 2019

2021 ◽  
Vol 10 (9) ◽  
Author(s):  
Nathan E. Stone ◽  
Amalee E. Nunnally ◽  
Chandler C. Roe ◽  
Heidie M. Hornstra ◽  
David M. Wagner ◽  
...  
Keyword(s):  
Clostridium Difficile ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Illumina Miseq ◽  
Single Chromosome ◽  
Content Type ◽  
Long Reads ◽  
Oxford Nanopore ◽  
Infection Resistance

ABSTRACT A single-chromosome closed genome of Peptacetobacter (Clostridium) hiranonis strain DGF055142 was generated using Illumina MiSeq short reads paired with Oxford Nanopore MinION long reads. This isolate was obtained from a canine in Flagstaff, Arizona, in 2019. Peptacetobacter (C.) hiranonis was hypothesized to contribute to canine Clostridium difficile infection resistance.

scholarly journals Complete Genome Sequence of Rubrobacter xylanophilus Strain AA3-22, Isolated from Arima Onsen in Japan

2019 ◽  
Vol 8 (34) ◽  
Author(s):  
Natsuki Tomariguchi ◽  
Kentaro Miyazaki
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Hot Spring ◽  
Sequencing Data ◽  
Short Read ◽  
Content Type ◽  
Short Read Sequencing ◽  
Oxford Nanopore ◽  
Long Read

Rubrobacter xylanophilus strain AA3-22, belonging to the phylum Actinobacteria, was isolated from nonvolcanic Arima Onsen (hot spring) in Japan. Here, we report the complete genome sequence of this organism, which was obtained by combining Oxford Nanopore long-read and Illumina short-read sequencing data.

scholarly journals Complete Genome Sequence of a Moderately Thermophilic Facultative Chemolithoautotrophic Hydrogen-Oxidizing Bacterium, Hydrogenophilus thermoluteolus TH-1

2018 ◽  
Vol 7 (6) ◽  
Author(s):  
Hiroyuki Arai ◽  
Yasuhito Shomura ◽  
Yoshiki Higuchi ◽  
Masaharu Ishii
Keyword(s):  
Carbon Dioxide ◽  
Energy Source ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Autotrophic Growth ◽  
Content Type ◽  
Moderately Thermophilic ◽  
Geothermal Environments ◽  
Th 1

Hydrogenophilus spp., which are moderately thermophilic aerobic betaproteobacteria, are widely distributed in geothermal environments. They fix carbon dioxide via the Calvin-Benson-Bassham cycle and exhibit rapid autotrophic growth using hydrogen as an energy source.

scholarly journals Complete Genome Sequence of wBp, the Wolbachia Endosymbiont of Brugia pahangi FR3

2020 ◽  
Vol 9 (27) ◽  
Author(s):  
Jarrett F. Lebov ◽  
John Mattick ◽  
Silvia Libro ◽  
Benjamin C. Sparklin ◽  
Matthew Chung ◽  
...  
Keyword(s):  
Lymphatic Filariasis ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Filarial Nematode ◽  
Brugia Pahangi ◽  
Content Type ◽  
Pacific Biosciences ◽  
Oxford Nanopore ◽  
Wolbachia Endosymbiont

ABSTRACT Lymphatic filariasis is a devastating disease caused by filarial nematode roundworms, which contain obligate Wolbachia endosymbionts. Here, we assembled the genome of wBp, the Wolbachia endosymbiont of the filarial nematode Brugia pahangi, from Illumina, Pacific Biosciences, and Oxford Nanopore data. The complete, circular genome is 1,072,967 bp.

scholarly journals Complete Genome Sequence of the Plant Pathogen Ralstonia solanacearum Strain CIAT-078, Isolated in Colombia, Obtained Using Oxford Nanopore Technology

2020 ◽  
Vol 9 (22) ◽  
Author(s):  
Diana López-Alvarez ◽  
Ana M. Leiva ◽  
Israel Barrantes ◽  
Juan M. Pardo ◽  
Viviana Dominguez ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Plant Pathogen ◽  
Ralstonia Solanacearum ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Causal Agent ◽  
Content Type ◽  
Solanacearum Strain ◽  
Oxford Nanopore

ABSTRACT Moko is one of the main diseases affecting banana and plantain in Colombia. Here, we report the genome sequence of the causal agent, the bacterium Ralstonia solanacearum (Smith) strain CIAT-078, collected in 2004 from affected plantains in central-west Colombia. The assembled genome was obtained using Oxford Nanopore Technology.

scholarly journals Complete Genome Sequence of Broad-Host-Range Staphylococcus aureus Myophage ESa1

2020 ◽  
Vol 9 (30) ◽  
Author(s):  
Roshan D’Souza ◽  
Andrey A. Filippov ◽  
Kirill V. Sergueev ◽  
Yunxiu He ◽  
Amanda M. Ward ◽  
...  
Keyword(s):  
Staphylococcus Aureus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Gc Content ◽  
Illumina Miseq ◽  
Broad Host Range ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type

ABSTRACT A potentially therapeutic Twort-like myophage, Esa1, with specificity toward Staphylococcus aureus was isolated from lake water. We report the complete genome sequence of ESa1, assembled using both MinION and Illumina MiSeq reads, consisting of 153,106 bp, with 30.3% GC content, 253 protein coding sequences, 4 tRNAs, and 10,437-bp direct terminal repeats.

scholarly journals Complete Genome Sequence of Streptomyces lunaelactis MM109T, Isolated from Cave Moonmilk Deposits

2018 ◽  
Vol 6 (21) ◽  
Author(s):  
Aymeric Naômé ◽  
Marta Maciejewska ◽  
Magdalena Calusinska ◽  
Loïc Martinet ◽  
Sinaeda Anderssen ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Illumina Hiseq ◽  
Linear Chromosome ◽  
Content Type ◽  
Oxford Nanopore

ABSTRACT Streptomyces lunaelactis MM109T is a ferroverdin A (anticholesterol) producer isolated from cave moonmilk deposits. The complete genome sequence of MM109T was obtained by combining Oxford Nanopore MinION and Illumina HiSeq and MiSeq technologies, revealing an 8.4-Mb linear chromosome and two plasmids, pSLUN1 (127,264 bp, linear) and pSLUN2 (46,827 bp, circular).

scholarly journals Complete Genome Sequence of Pasteurella multocida HuN001, a Capsular Type A Strain from a Human

2021 ◽  
Vol 10 (26) ◽  
Author(s):  
Lin Lin ◽  
Chunhui Li ◽  
Fei Wang ◽  
Xueying Wang ◽  
Yue Zhang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Pasteurella Multocida ◽  
Sputum Sample ◽  
Capsular Type ◽  
Circular Chromosome ◽  
Content Type ◽  
Oxford Nanopore ◽  
Oxford Nanopore Technologies

Here, we report the complete genome sequence of clinical Pasteurella multocida strain HuN001, which was cultured from a sputum sample from a patient with pneumonia. Oxford Nanopore Technologies sequencing provided a complete genome sequence of P. multocida HuN001, which contains a 2,287,216-bp circular chromosome with an average G+C content of 40.33%.

scholarly journals Complete Genome Sequence of Microbacterium sp. Strain Nx66, Isolated from Waters Contaminated with Petrochemicals in El Saf-Saf Valley, Algeria

2020 ◽  
Vol 9 (47) ◽  
Author(s):  
Nardjess Chéraiti ◽  
Frédéric Plewniak ◽  
Salima Tighidet ◽  
Amalia Sayeh ◽  
Lisa Gil ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Illumina Miseq ◽  
Long Reads ◽  
Oxford Nanopore

ABSTRACT Microbacterium sp. strain Nx66 was isolated from waters contaminated by petrochemical effluents collected in Algeria. Its genome was sequenced using Illumina MiSeq (2 × 150-bp read pairs) and Oxford Nanopore (long reads) technologies and was assembled using Unicycler. It is composed of one chromosome of 3.42 Mb and one plasmid of 34.22 kb.

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