scholarly journals Draft Genome Sequence of a Pseudomonas sp. Strain Carrying bla IMP-25 and bla VIM-2 Carbapenemase Genes from Hospital Sewage

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Yiyi Hu ◽  
Wenjing Wu ◽  
Yu Feng ◽  
Xiaoxia Zhang ◽  
Zhiyong Zong
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Trna Genes ◽  
Pseudomonas Sp ◽  
West China Hospital ◽  
Coding Sequences ◽  
West China ◽  
Hospital Sewage

Pseudomonas strain WCHP16 recovered from hospital sewage in West China Hospital, Chengdu, China was found to carry two carbapenemase genes bla IMP-25 and bla VIM-2 . Here, we report its 5.7-Mb draft genome sequence, comprising 141 contigs and an average 59.53% G+C content. The genome contained 5,504 coding sequences and 67 tRNA genes.

scholarly journals Draft Genome Sequence of Pseudomonas sp. Strain T2.31D-1, Isolated from a Drilling Core Sample Obtained 414 Meters below Surface in the Iberian Pyrite Belt

2021 ◽  
Vol 10 (1) ◽  
Author(s):  
J. M. Martínez ◽  
C. Escudero ◽  
T. Leandro ◽  
G. Mateos ◽  
R. Amils
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Iberian Pyrite Belt ◽  
Core Sample ◽  
Rrna Operon ◽  
Draft Genome Sequence ◽  
Trna Genes ◽  
Pseudomonas Sp ◽  
Coding Sequences ◽  
Drilling Core

ABSTRACT We report the draft genome of Pseudomonas sp. strain T2.31D-1, which was isolated from a drilling core sample obtained 414 m below surface in the Iberian Pyrite Belt. The genome consists of a 4.7-Mb chromosome with 4,428 coding sequences, 1 rRNA operon, 59 tRNA genes, and a 31.8-kb plasmid.

scholarly journals Draft Genome Sequence of Limisphaera ngatamarikiensis NGM72.4T, a Moderately Alkaliphilic Thermophile Belonging to the Class Verrucomicrobiae

2020 ◽  
Vol 9 (18) ◽  
Author(s):  
Carlo R. Carere ◽  
Jason A. Steen ◽  
Philip Hugenholtz ◽  
Matthew B. Stott
Keyword(s):  
New Zealand ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Rrna Genes ◽  
Trna Genes ◽  
Illumina Hiseq ◽  
Coding Sequences ◽  
Content Type ◽  
Aotearoa New Zealand

Limisphaera ngatamarikiensis NGM72.4T is a thermophilic representative of the class Verrucomicrobiae. Isolated from geothermally heated subaqueous clay sediments from a Ngatamariki hotspring in Aotearoa New Zealand, the 3,908,748-bp genome was sequenced using the Illumina HiSeq 2500 platform. Annotation revealed 3,083 coding sequences, including 3,031 proteins, 3 rRNA genes, and 46 tRNA genes.

scholarly journals Draft Genome Sequence of Larkinella sp. Strain BK230, Isolated from Populus deltoides Roots

2020 ◽  
Vol 9 (12) ◽  
Author(s):  
Dale A. Pelletier ◽  
Leah H. Burdick ◽  
Mircea Podar ◽  
Christopher W. Schadt ◽  
Udaya C. Kalluri
Keyword(s):  
Genome Sequence ◽  
Populus Deltoides ◽  
Heterotrophic Bacterium ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Trna Genes ◽  
Coding Sequences ◽  
Content Type ◽  
Eastern Cottonwood

Larkinella sp. strain BK230, a heterotrophic bacterium of the phylum Bacteroidetes, was isolated from the roots of a field-grown eastern cottonwood tree (Populus deltoides) located in Georgia. The draft 7.27-Mb genome has a G+C content of 53.4% and contains 6,026 coding sequences, including 41 tRNA genes.

scholarly journals Draft Genome Sequence of a High-Level Colistin-Resistant Clinical Strain of the Enterobacter cloacae Complex

2017 ◽  
Vol 5 (14) ◽  
Author(s):  
Ji Lin ◽  
Feifei Zhao ◽  
Yu Feng ◽  
Zhiyong Zong
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Enterobacter Cloacae ◽  
Draft Genome Sequence ◽  
Clinical Strain ◽  
Trna Genes ◽  
Coding Sequences ◽  
Content Type ◽  
High Level ◽  
Enterobacter Cloacae Complex

ABSTRACT Strain WCHECl-C4 of the Enterobacter cloacae complex, recovered from the blood of a patient with peritonitis, was high-level resistant to colistin. Here, we report its 5.1-Mb draft genome sequence, comprising 92 contigs with an average 55.74% G+C content. The genome contained 4,783 coding sequences and 68 tRNA genes.

scholarly journals Draft Genome Sequence of Antarctic Pseudomonas sp. Strain KG01 with Full Potential for Biotechnological Applications

2015 ◽  
Vol 3 (4) ◽  
Author(s):  
María S. Pavlov ◽  
Felipe Lira ◽  
José L. Martínez ◽  
Jorge Olivares ◽  
Sergio H. Marshall
Keyword(s):  
Soil Sample ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Full Potential ◽  
Pseudomonas Sp ◽  
Antarctic Soil ◽  
Biotechnological Applications ◽  
Free Living ◽  
Coding Sequences

We report here the draft genome sequence of a free-living psychrotolerant, Pseudomonas sp. strain KG01, isolated from an Antarctic soil sample and displaying interesting antimicrobial and surfactant activities. The sequence is 6.3 Mb long and includes 5,648 predicted-coding sequences.

scholarly journals Draft Genome Sequence of Pseudomonas sp. Strain ICMP 22404, Isolated from Solanum lycopersicum Plants with Pith Necrosis Symptoms

2019 ◽  
Vol 8 (34) ◽  
Author(s):  
Luciano A. Rigano ◽  
Merje Toome-Heller ◽  
Katharina M. Hofer ◽  
Brett J. R. Alexander
Keyword(s):  
Genome Size ◽  
Solanum Lycopersicum ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Pseudomonas Sp ◽  
Coding Sequences ◽  
Content Type ◽  
Pith Necrosis

We report here the draft genome sequence of Pseudomonas sp. strain ICMP 22404, isolated from Solanum lycopersicum plants showing pith necrosis symptoms. The draft genome size is 6,686,400 bp, consisting of 86 contigs with a G+C content of 60.7% and containing 5,876 coding sequences, 60 tRNAs, and 11 rRNAs.

scholarly journals Draft Genome Sequence of Pseudomonas sp. Strain CCA1, Isolated from Leaf Soil

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Hironaga Akita ◽  
Zen-ichiro Kimura ◽  
Tamotsu Hoshino
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Gc Content ◽  
Draft Genome Sequence ◽  
Pseudomonas Sp ◽  
Coding Sequences ◽  
Hiroshima Prefecture ◽  
Hiroshima City

Pseudomonas sp. strain CCA1 was isolated from leaf soil collected in Higashi-Hiroshima City in Hiroshima Prefecture, Japan. Here, we present a draft genome sequence of this strain. The genome consists of 24 contigs for a total of 6,993,992 bp, 8,917 predicted coding sequences, and a GC content of 67.2%.

scholarly journals Draft Genome Sequence of a Colistin-Resistant Klebsiella pneumoniae Clinical Strain Carrying the blaNDM-1 Carbapenemase Gene

2017 ◽  
Vol 5 (7) ◽  
Author(s):  
Zhihong Yao ◽  
Yu Feng ◽  
Ji Lin ◽  
Zhiyong Zong
Keyword(s):  
Klebsiella Pneumoniae ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Clinical Strain ◽  
Trna Genes ◽  
Coding Sequences ◽  
Content Type ◽  
Carbapenemase Gene

ABSTRACT Klebsiella pneumoniae strain WCHKP1845, recovered from the sputum of a patient with pneumonia, was resistant to colistin and carried the carbapenemase gene bla NDM-1. Here, we report its 5.4-Mb draft genome sequence, comprising 140 contigs with an average 57.33% G+C content. The genome contains 5,118 coding sequences and 88 tRNA genes.

scholarly journals Draft Genome Sequence for the Type Strain of Corynebacterium afermentans LCDC 88-0199 T , Isolated from a Human Blood Culture

2016 ◽  
Vol 4 (4) ◽  
Author(s):  
Anne-Marie Bernier ◽  
Kathryn Bernard
Keyword(s):  
Blood Culture ◽  
Genome Sequence ◽  
Human Blood ◽  
Type Strain ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Trna Genes ◽  
Coding Sequences ◽  
Genome Coverage ◽  
Rrna Sequences

A draft genome for Corynebacterium afermentans LCDC 88-0199 T was investigated. The size of the genome was 2,345,615 bp with an observed G+C content of 64.85%. Annotation revealed 2 rRNA sequences, 54 tRNA genes, and 2,164 coding sequences. Genome coverage was 85× and consisted of 24 contigs with an N 50 of 187,988 bp.

scholarly journals Draft Genome Sequence of Pseudomonas sp. Strain B1, Isolated from a Contaminated Sediment

2018 ◽  
Vol 6 (25) ◽  
Author(s):  
Ashish Pathak ◽  
Rajneesh Jaswal ◽  
Paul Stothard ◽  
Scott Brooks ◽  
Ashvini Chauhan
Keyword(s):  
Genome Sequence ◽  
Contaminated Soil ◽  
Draft Genome ◽  
Genomic Islands ◽  
Draft Genome Sequence ◽  
Pseudomonas Sp ◽  
Contaminated Sediment ◽  
Coding Sequences ◽  
Content Type ◽  
Biodegradative Genes

ABSTRACT The draft genome sequence of Pseudomonas sp. strain B1, isolated from a contaminated soil, is reported. The genome comprises 6,706,934 bases, 6,059 coding sequences, and 70 RNAs and has a G+C content of 60.3%. A suite of biodegradative genes, many located on genomic islands, were identified from strain B1, further enhancing our understanding of the versatile pseudomonads.

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