scholarly journals Draft Genome Sequence of Pseudomonas sp. Strain ICMP 22404, Isolated from Solanum lycopersicum Plants with Pith Necrosis Symptoms

2019 ◽  
Vol 8 (34) ◽  
Author(s):  
Luciano A. Rigano ◽  
Merje Toome-Heller ◽  
Katharina M. Hofer ◽  
Brett J. R. Alexander
Keyword(s):  
Genome Size ◽  
Solanum Lycopersicum ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Pseudomonas Sp ◽  
Coding Sequences ◽  
Content Type ◽  
Pith Necrosis

We report here the draft genome sequence of Pseudomonas sp. strain ICMP 22404, isolated from Solanum lycopersicum plants showing pith necrosis symptoms. The draft genome size is 6,686,400 bp, consisting of 86 contigs with a G+C content of 60.7% and containing 5,876 coding sequences, 60 tRNAs, and 11 rRNAs.

scholarly journals Genome Sequence Data of Lactobacillus ruminis ICIS-540, Isolated from the Intestine of a Healthy Woman

2020 ◽  
Vol 9 (49) ◽  
Author(s):  
Elena V. Ivanova ◽  
Anastasia V. Bekpergenova ◽  
Natalia B. Perunova ◽  
Sergey V. Andryuschenko ◽  
Taisia A. Bondarenko ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Sequence Data ◽  
Draft Genome ◽  
Healthy Woman ◽  
Human Colon ◽  
Draft Genome Sequence ◽  
Coding Sequences ◽  
Content Type ◽  
Lactobacillus Ruminis

ABSTRACT Data on the draft genome sequence of Lactobacillus ruminis ICIS-540 are presented in this report. This Lactobacillus strain was isolated from the human colon as a prospective probiotic candidate. The genome size was 2,397,517 bp (G+C content, 42.7%). Annotation revealed 2,847 coding sequences, including 2,573 proteins.

scholarly journals Draft Genome Sequence of Duganella sp. Strain DN04, Isolated from Cultivated Soil

2019 ◽  
Vol 8 (32) ◽  
Author(s):  
Rachel Raths ◽  
Vincent Peta ◽  
Heike Bücking
Keyword(s):  
North Carolina ◽  
Genome Size ◽  
Genome Sequence ◽  
Novel Species ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Maize Field

Here, we sequenced Duganella sp. strain DN04, a novel species within the genus Duganella that was isolated from a maize field in North Carolina. The assembled draft genome size is 6,562,230 bp, with a total of 6,039 protein coding sequences and 3,889 functionally assigned genes, including genes putatively involved in the colonization of plants.

scholarly journals Draft Genome Sequence of Pseudomonas sp. Strain B1, Isolated from a Contaminated Sediment

2018 ◽  
Vol 6 (25) ◽  
Author(s):  
Ashish Pathak ◽  
Rajneesh Jaswal ◽  
Paul Stothard ◽  
Scott Brooks ◽  
Ashvini Chauhan
Keyword(s):  
Genome Sequence ◽  
Contaminated Soil ◽  
Draft Genome ◽  
Genomic Islands ◽  
Draft Genome Sequence ◽  
Pseudomonas Sp ◽  
Contaminated Sediment ◽  
Coding Sequences ◽  
Content Type ◽  
Biodegradative Genes

ABSTRACT The draft genome sequence of Pseudomonas sp. strain B1, isolated from a contaminated soil, is reported. The genome comprises 6,706,934 bases, 6,059 coding sequences, and 70 RNAs and has a G+C content of 60.3%. A suite of biodegradative genes, many located on genomic islands, were identified from strain B1, further enhancing our understanding of the versatile pseudomonads.

scholarly journals Draft Genome Sequence of the Chitin-Degrading Psychrotolerant Bacterium Pedobacter jejuensis TN23, Isolated from Antarctic Soil

2021 ◽  
Vol 10 (26) ◽  
Author(s):  
Ahnna Cho ◽  
Yong-Joon Cho ◽  
Ok-Sun Kim
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Antarctic Soil ◽  
Coding Sequences ◽  
Content Type ◽  
Terra Nova Bay ◽  
Victoria Land ◽  
Psychrotolerant Bacterium

Pedobacter jejuensis TN23 was isolated from soil from Terra Nova Bay, Victoria Land, Antarctica. The assembled draft genome size is 4,795,808 bp, and it contains a total of 4,095 genes with 3,970 coding sequences, including genes putatively involved in the degradation of chitin.

scholarly journals Draft Genome Sequence of Massilia sp. Strain ONC3, a Novel Bacterial Species of the Oxalobacteraceae Family Isolated from Garden Soil

2019 ◽  
Vol 8 (32) ◽  
Author(s):  
Vincent Peta ◽  
Rachel Raths ◽  
Heike Bücking
Keyword(s):  
Sequence Analysis ◽  
Genome Size ◽  
Genome Sequence ◽  
Bacterial Species ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Garden Soil ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type

From garden soil, we isolated and sequenced Massilia sp. strain ONC3, a new member of the Oxalobacteraceae within the Massilia genus. Sequence analysis showed an assembled genome size of 5,622,601 bp, with a predicted total of 5,104 protein-coding sequences, 3,194 functionally assigned genes, 2 rRNA operons, and 56 tRNAs.

scholarly journals Draft Genome Sequence of Paraburkholderia sp. UYCP14C, a Rhizobium Strain Isolated from Root Nodules of Calliandra parvifolia

2019 ◽  
Vol 8 (16) ◽  
Author(s):  
Mauricio Langleib ◽  
Martín Beracochea ◽  
María Zabaleta ◽  
Federico Battistoni ◽  
José Sotelo-Silveira ◽  
...  
Keyword(s):  
Nitrogen Fixation ◽  
Genome Size ◽  
Genome Sequence ◽  
Root Nodules ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Rhizobium Strain ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type

Here, we present the draft genome sequence of strain UYCP14C, a rhizobium isolated from Calliandra parvifolia nodules. The assembled genome size was around 9.8 million bp, containing 9,031 predicted protein-coding sequences, including several symbiotic and nitrogen fixation genes.

scholarly journals Draft Genome Sequence of Urease-Producing Pseudorhodobacter sp. Strain E13, Isolated from the Yellow Sea in Gunsan, South Korea

2019 ◽  
Vol 8 (23) ◽  
Author(s):  
Si Chul Kim ◽  
Hyo Jung Lee
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Yellow Sea ◽  
Draft Genome ◽  
The Yellow Sea ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Gram Negative ◽  
Content Type

Here, we report the draft genome sequence of Pseudorhodobacter sp. strain E13, a Gram-negative, aerobic, nonflagellated, and rod-shaped bacterium which was isolated from the Yellow Sea in South Korea. The assembled genome sequence is 3,878,578 bp long with 3,646 protein-coding sequences in 159 contigs.

scholarly journals Draft Genome Sequence of Enterococcus faecalis DD14, a Bacteriocinogenic Lactic Acid Bacterium with Anti-Clostridium Activity

2017 ◽  
Vol 5 (30) ◽  
Author(s):  
Yanath Belguesmia ◽  
Valérie Leclère ◽  
Matthieu Duban ◽  
Eric Auclair ◽  
Djamel Drider
Keyword(s):  
Lactic Acid ◽  
Lactic Acid Bacterium ◽  
Enterococcus Faecalis ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Coding Sequences ◽  
Content Type ◽  
Gram Positive Bacteria ◽  
Healthy Newborn

ABSTRACT We report the draft genome sequence of Enterococcus faecalis DD14, a strain isolated from meconium of a healthy newborn at Roubaix Hospital (France). The strain displayed antagonism against a set of Gram-positive bacteria through concomitant production of lactic acid and bacteriocin. The genome has a size of 2,893,365 bp and a 37.3% G+C ratio and is predicted to contain at least 2,755 coding sequences and 62 RNAs.

scholarly journals Genome Sequence of Clostridium botulinum Strain Adk2012 Associated with a Foodborne Botulinum Case in Tottori, Japan, in 2012

2017 ◽  
Vol 5 (34) ◽  
Author(s):  
Hiroshi Asakura ◽  
Shiori Yamamoto ◽  
Yoshika Momose ◽  
Haru Kato ◽  
Masaaki Iwaki ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Clostridium Botulinum ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Foodborne Botulism

ABSTRACT We report here a draft genome sequence of Clostridium botulinum Adk2012 responsible for a foodborne botulism case that occurred in Tottori, Japan, in 2012. Its genome size was 2,904,173 bp, with 46 rRNAs and 54 tRNAs, at a coverage of 14.5×.

scholarly journals Draft Genome Sequence of Freshwater-Derived Streptomyces sp. Strain BPSDS2, Isolated from Damte Stream, Northeast India

2019 ◽  
Vol 8 (43) ◽  
Author(s):  
Zothanpuia ◽  
Ajit Kumar Passari ◽  
Purbajyoti Deka ◽  
Vinay Rajput ◽  
Lakshmi P. M. Priya ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Northeast India ◽  
Draft Genome Sequence ◽  
Freshwater Sediments ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Streptomyces Sp

We report the draft genome sequence of Streptomyces sp. strain BPSDS2, isolated from freshwater sediments in Northeast India. The draft genome has a size of 8.27 Mb and 7,559 protein-coding sequences.

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