scholarly journals Large Blooms ofBacillales(Firmicutes) Underlie the Response to Wetting of Cyanobacterial Biocrusts at Various Stages of Maturity

mBio ◽  
2018 ◽  
Vol 9 (2) ◽  
pp. e01366-16 ◽  
Author(s):  
Ulas Karaoz ◽  
Estelle Couradeau ◽  
Ulisses Nunes da Rocha ◽  
Hsiao-Chien Lim ◽  
Trent Northen ◽  
...  

ABSTRACTBiological soil crusts (biocrusts) account for a substantial portion of primary production in dryland ecosystems. They successionally mature to deliver a suite of ecosystem services, such as carbon sequestration, water retention and nutrient cycling, and climate regulation. Biocrust assemblages are extremely well adapted to survive desiccation and to rapidly take advantage of the periodic precipitation events typical of arid ecosystems. Here we focus on the wetting response of incipient cyanobacterial crusts as they mature from “light” to “dark.” We sampled a cyanobacterial biocrust chronosequence before (dry) and temporally following a controlled wetting event and used high-throughput 16S rRNA and rRNA gene sequencing to monitor the dynamics of microbial response. Overall, shorter-term changes in phylogenetic beta diversity attributable to periodic wetting were as large as those attributable to biocrust successional stage. Notably, more mature crusts showed significantly higher resistance to precipitation disturbance. A large bloom of a few taxa within theFirmicutes, primarily in the orderBacillales, emerged 18 h after wetting, while filamentous crust-forming cyanobacteria showed variable responses to wet-up across the successional gradient, with populations collapsing in less-developed light crusts but increasing in later-successional-stage dark crusts. Overall, the consistentBacillalesbloom accompanied by the variable collapse of pioneer cyanobacteria of theOscillatorialesorder across the successional gradient suggests that the strong response of few organisms to a hydration pulse with the mortality of the autotroph might have important implications for carbon (C) balance in semiarid ecosystems.IMPORTANCEDesert biological soil crusts are terrestrial topsoil microbial communities common to arid regions that comprise 40% of Earth’s terrestrial surface. They successionally develop over years to decades to deliver a suite of ecosystem services of local and global significance. Ecosystem succession toward maturity has been associated with both resistance and resilience to disturbance. Recent work has shown that the impacts of both climate change and physical disturbance on biocrusts increase the potential for successional resetting. A larger proportion of biocrusts are expected to be at an early developmental stage, hence increasing susceptibility to changes in precipitation frequencies. Therefore, it is essential to characterize how biocrusts respond to wetting across early developmental stages. In this study, we document the wetting response of microbial communities from a biocrust chronosequence. Overall, our results suggest that the cumulative effects of altered precipitation frequencies on the stability of biocrusts will depend on biocrust maturity.

2015 ◽  
Author(s):  
Charles Pepe-Ranney ◽  
Chantal Koechli ◽  
Ruth Potrafka ◽  
Cheryl Andam ◽  
Erin Eggleston ◽  
...  

Biological soil crusts (BSC) are key components of ecosystem productivity in arid lands and they cover a substantial fraction of the terrestrial surface. In particular, BSC N2-fixation contributes significantly to the nitrogen (N) budget of arid land ecosystems. In mature crusts, N2-fixation is largely attributed to heterocystous cyanobacteria, however, early successional crusts possess few N2-fixing cyanobacteria and this suggests that microorganisms other than cyanobacteria mediate N2-fixation during the critical early stages of BSC development. DNA stable isotope probing (DNA-SIP) with15N2revealed thatClostridiaceaeandProteobacteriaare the most common microorganisms that assimilate15N2in early successional crusts. TheClostridiaceaeidentified are divergent from previously characterized isolates, though N2-fixation has previously been observed in this family. The Proteobacteria identified share >98.5% SSU rRNA gene sequence identity with isolates from genera known to possess diazotrophs (e.g.Pseudomonas,Klebsiella,Shigella, andIdeonella). The low abundance of these heterotrophic diazotrophs in BSC may explain why they have not been characterized previously. Diazotrophs play a critical role in BSC formation and characterization of these organisms represents a crucial step towards understanding how anthropogenic change will affect the formation and ecological function of BSC in arid ecosystems.


2004 ◽  
Vol 70 (2) ◽  
pp. 973-983 ◽  
Author(s):  
Chris M. Yeager ◽  
Jennifer L. Kornosky ◽  
David C. Housman ◽  
Edmund E. Grote ◽  
Jayne Belnap ◽  
...  

ABSTRACT The objective of this study was to characterize the community structure and activity of N2-fixing microorganisms in mature and poorly developed biological soil crusts from both the Colorado Plateau and Chihuahuan Desert. Nitrogenase activity was approximately 10 and 2.5 times higher in mature crusts than in poorly developed crusts at the Colorado Plateau site and Chihuahuan Desert site, respectively. Analysis of nifH sequences by clone sequencing and the terminal restriction fragment length polymorphism technique indicated that the crust diazotrophic community was 80 to 90% heterocystous cyanobacteria most closely related to Nostoc spp. and that the composition of N2-fixing species did not vary significantly between the poorly developed and mature crusts at either site. In contrast, the abundance of nifH sequences was approximately 7.5 times greater (per microgram of total DNA) in mature crusts than in poorly developed crusts at a given site as measured by quantitative PCR. 16S rRNA gene clone sequencing and microscopic analysis of the cyanobacterial community within both crust types demonstrated a transition from a Microcoleus vaginatus-dominated, poorly developed crust to mature crusts harboring a greater percentage of Nostoc and Scytonema spp. We hypothesize that ecological factors, such as soil instability and water stress, may constrain the growth of N2-fixing microorganisms at our study sites and that the transition to a mature, nitrogen-producing crust initially requires bioengineering of the surface microenvironment by Microcoleus vaginatus.


Phytotaxa ◽  
2020 ◽  
Vol 470 (4) ◽  
pp. 263-281
Author(s):  
NÁTHALI MARIA MACHADO DE LIMA ◽  
LUIS H.Z. BRANCO

In the uppermost millimeters of soils is commonly found a thin layer of cryptobiotic organisms, including cyanobacteria, microalgae, lichens, mosses, fungi, bacteria and archaea. These communities are called Biological Soil Crusts (BSCs) or biocrusts and perform important ecological functions, mainly attributed to their capacity of providing soil stability and incorporate nutrients through nitrogen and carbon fixation. Among all the organisms found in the biocrusts, the filamentous cyanobacteria Microcoleus vaginatus and M. steenstrupii are the best studied soil colonizers. The genus Microcoleus is considered complex and has been showing close relation with some species of Phormidium. The poor understanding about these two genera is a limit to the description of the real composition of biocrusts and can generate underestimations in the diversity community and the use of wrong organisms in applied projects (e.g. environmental restoration). This work studied eight cyanobacterial populations from Brazilian BSCs sampled in the Caatinga biome. The populations presented Microcoleus-like and Phormidium-like morphologies, but the phylogenetic analyses based on 16S rRNA gene sequences showed that they represent three new genera and six new species of filamentous cyanobacteria associated to the cryptic genera, they are Pycnacronema caatingensis sp. nov., Pycnacronema edaphica sp. nov., Gracilinea arenicola gen. et sp. nov., Marmoreocelis xerophila gen. et sp. nov., Konicacronema caatinguensis gen. et sp. nov. and Trichocoleus caatingensis sp. nov. The generic name and specific epithets of the new taxa are proposed according to the provisions of the International Code of Nomenclature of algae, fungi, and plants.


2018 ◽  
Author(s):  
Jessica A. Gilbert ◽  
Jeffrey D. Corbin

Abstract Biological soil crusts (BSCs) are known to affect plants’ germination and seedling establishment in arid ecosystems, but their ecological role in more mesic climates is not so well-known. We tested the effects of moss-crusted versus uncrusted soils on seed germination dynamics in a temperate pine barren ecosystem. We conducted a 35-day laboratory assay of seed germination on moss-crusted soils versus uncrusted soils from the Albany (NY) Pine Bush Preserve. We tested total seed germination and the number of days to 50% of total germination (T50) of two herbaceous perennial forb species in each soil type. Three and five times more seeds germinated on uncrusted soil than on crusted soil for bush clover (Lespedeza capitata) and wild lupine (Lupinus perennis), respectively. Seeds of both species also germinated approximately 10 days earlier on uncrusted soil than on crusted soil. This study, and others in similar habitats, show that BSCs in mesic climates can influence germination and other early life-history stages of plants. We hope that further study of the interactions between BSCs and vascular plants in mesic climates will contribute to our understanding of the ecology of BSCs outside the arid and semiarid climates where they are more extensively studied.


2010 ◽  
Vol 333 (1-2) ◽  
pp. 21-34 ◽  
Author(s):  
Andrea P. Castillo-Monroy ◽  
Fernando T. Maestre ◽  
Manuel Delgado-Baquerizo ◽  
Antonio Gallardo

2013 ◽  
Vol 726-731 ◽  
pp. 3680-3684
Author(s):  
Ying Zhang ◽  
Cheng You Cao ◽  
Peng Zhang

The purpose of this study is to assess the application of denaturing gradient gel electrophoresis (DGGE) for analyzing the bacterial and cyanobacterial diversities of biological soil crusts (BSCs) in sandy land. Soil microbial DNA was extracted from BSCs under different plantations in Horqin Sandy Land of Northeast China. 16S rRNA gene fragments from bacteria and cyanobacteria were amplified by universal bacterial and cyanobacteria-specific primers. Fourteen and six prominent bands were detected in the bacterial and cyanobacterial DGGE profiles, respectively. These bands were excised, cloned and sequenced. Phylogenetic analysis classified the bacterial sequences into the following main groups:Escherichia,Bacillus,Paenibacillus,Shigella, andPseudomonas. The cyanobacterial sequences were classified asMicrocoleus,LeptolyngbyaandHaslea. Our study suggests that DGGE is a useful technique for detecting dominant species compositions of bacterial and cyanobacterial communities in biological soil crusts, and specific primers are recommended for PCR of 16S rRNA gene fragments.


2014 ◽  
Vol 23 (7) ◽  
pp. 1735-1755 ◽  
Author(s):  
Stefanie Maier ◽  
Thomas S. B. Schmidt ◽  
Lingjuan Zheng ◽  
Thomas Peer ◽  
Viktoria Wagner ◽  
...  

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