scholarly journals Genome Sequences of Mycobacterium smegmatis Phages Purgamenstris and PhancyPhin

2021 ◽  
Vol 10 (9) ◽  
Author(s):  
Amairani D. Ramirez Rendon ◽  
Angelica Diaz-Sanchez ◽  
Ryan J. Pool ◽  
Fatin Ahmed ◽  
Aissa Mendez ◽  
...  
Keyword(s):  
Mycobacterium Smegmatis ◽  
Nucleotide Identity ◽  
Genome Sequences ◽  
Enrichment Method ◽  
Content Type ◽  
Soil Enrichment

ABSTRACT Two novel mycobacteriophages, PhancyPhin and Purgamenstris, were isolated from the Houston, Texas, area. They were isolated in the same year with the soil enrichment method using the host Mycobacterium smegmatis mc2 155. They exhibit a 99.55% nucleotide identity with each other.

scholarly journals Genome Sequences of Mycobacteriophages Jane and Sneeze, New Members of Cluster G

2017 ◽  
Vol 5 (11) ◽  
Author(s):  
Catherine M. Mageeney ◽  
Cimrin Bhalla ◽  
Charles A. Bowman ◽  
Bhavishya Devireddy ◽  
Adrienne P. Dzurick ◽  
...  
Keyword(s):  
Costa Rica ◽  
Mycobacterium Smegmatis ◽  
Mobile Element ◽  
Genome Sequences ◽  
New Members ◽  
Content Type ◽  
The Right

ABSTRACT Jane and Sneeze are newly isolated phages of Mycobacterium smegmatis mc2155 from Hillsborough, NJ, and Palo Verde, Costa Rica, respectively. Both are cluster G, subcluster G1 mycobacteriophages. Notable nucleotide differences exist between genomes in the right half, including the presence of mycobacteriophage mobile element 1 (MPME1) in Jane.

scholarly journals Evaluation of Genome Sequences of the Bacteriophages JeTaime and Luna22

2021 ◽  
Vol 10 (40) ◽  
Author(s):  
Maximiliano F. Flota ◽  
Caitlyn R. Moss ◽  
Mitchell F. Balish ◽  
Nikki Chen ◽  
Kristen C. Cherry ◽  
...  
Keyword(s):  
South Carolina ◽  
Rhode Island ◽  
Mycobacterium Smegmatis ◽  
Genome Sequences ◽  
Content Type

The mycobacteriophages JeTaime (E cluster) and Luna22 (Q cluster) were isolated from soil in Providence, Rhode Island, and Charleston, South Carolina, respectively, using a Mycobacterium smegmatis mc 2 155 host. The genome of JeTaime is 75,099 bp (142 predicted genes), and that of Luna22 is 53,730 bp (87 predicted genes). Both phages exhibit Siphoviridae morphology.

scholarly journals Genome Sequences of Two Choline-Utilizing Methanogenic Archaea, Methanococcoides spp., Isolated from Marine Sediments

2019 ◽  
Vol 8 (18) ◽  
Author(s):  
Gordon Webster ◽  
Alex J. Mullins ◽  
Andrew J. Watkins ◽  
Edward Cunningham-Oakes ◽  
Andrew J. Weightman ◽  
...  
Keyword(s):  
Marine Sediments ◽  
Dna Hybridization ◽  
In Silico ◽  
Methanogenic Archaea ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Genome Sequences ◽  
Content Type

The genomes of two Methanococcoides spp. that were isolated from marine sediments and are capable of carrying out methanogenesis from choline and other methylotrophic substrates were sequenced. The average nucleotide identity and in silico DNA-DNA hybridization analyses demonstrate that they represent species different from those previously described.

scholarly journals Genome Sequences of vB_RleM_RL38JI and vB_RleM_RL2RES, Two Virulent Rhizobium leguminosarum Transducing Phages

2020 ◽  
Vol 9 (11) ◽  
Author(s):  
K. M. Damitha Gunathilake ◽  
Supriya V. Bhat ◽  
Christopher K. Yost ◽  
Michael F. Hynes
Keyword(s):  
Rhizobium Leguminosarum ◽  
Nucleotide Identity ◽  
Genome Sequences ◽  
Content Type ◽  
Generalized Transduction

Phages vB_RleM_RL38JI and vB_RleM_RL2RES are known to mediate generalized transduction in Rhizobium leguminosarum. The RL38JI genome consists of 158,577 nucleotides and 270 predicted genes, whereas RL2RES has a 156,878-bp genome with 262 predicted genes. The two genomes are similar, with 82.88% nucleotide identity to each other.

scholarly journals Draft Genome Sequences of Thiorhodococcus mannitoliphagus and Thiorhodococcus minor, Purple Sulfur Photosynthetic Bacteria in the Gammaproteobacterial Family Chromatiaceae

2020 ◽  
Vol 9 (14) ◽  
Author(s):  
Fabiola A. Aviles ◽  
Terry E. Meyer ◽  
John A. Kyndt
Keyword(s):  
Photosynthetic Bacteria ◽  
Draft Genome ◽  
Nucleotide Identity ◽  
Whole Genome ◽  
Average Nucleotide Identity ◽  
Genome Sequences ◽  
Content Type

We have determined the draft genome sequences of Thiorhodococcus mannitoliphagus and Thiorhodococcus minor for comparison with those of T. drewsii and Imhoffiella purpurea. According to average nucleotide identity (ANI) and whole-genome phylogenetic comparisons, these two species are clearly distinct from the Imhoffiella species and T. drewsii.

scholarly journals Complete Genome Sequences of Mycobacteriophages OKaNui and DroogsArmy

2020 ◽  
Vol 9 (33) ◽  
Author(s):  
Kayla M. Fast ◽  
Kadaisha G. Johnson ◽  
Kaitlyn N. Mayfield ◽  
Leah A. Stephens ◽  
T. Hunter Reid ◽  
...  
Keyword(s):  
United States ◽  
Mycobacterium Smegmatis ◽  
Complete Genome ◽  
The United States ◽  
Genome Sequences ◽  
Bacterial Host ◽  
Content Type

ABSTRACT Mycobacteriophages OKaNui and DroogsArmy were isolated from soil using the bacterial host Mycobacterium smegmatis mc2155, which belongs to the phylum Actinobacteria. OKaNui was discovered in east Mississippi and DroogsArmy in west Alabama in the United States. The genomes of OKaNui and DroogsArmy were 51,424 bp and 53,254 bp long, respectively.

scholarly journals Genome Sequences of Mycobacteriophages Amgine, Amohnition, Bella96, Cain, DarthP, Hammy, Krueger, LastHope, Peanam, PhelpsODU, Phrank, SirPhilip, Slimphazie, and Unicorn

2017 ◽  
Vol 5 (49) ◽  
Author(s):  
Kirk R. Anders ◽  
Nazir Barekzi ◽  
Aaron A. Best ◽  
Gregory D. Frederick ◽  
Dmitri V. Mavrodi ◽  
...  
Keyword(s):  
Mycobacterium Smegmatis ◽  
Sequence Diversity ◽  
Genome Sequences ◽  
Content Type ◽  
Integration Sites

ABSTRACT We report the genome sequences of 14 cluster K mycobacteriophages isolated using Mycobacterium smegmatis mc²155 as host. Four are closely related to subcluster K1 phages, and 10 are members of subcluster K6. The phage genomes span considerable sequence diversity, including multiple types of integrases and integration sites.

scholarly journals Complete Genome Sequences of Mycobacteriophages Candle, Schatzie, Sumter, and Waleliano

2019 ◽  
Vol 8 (30) ◽  
Author(s):  
Kayla M. Fast ◽  
Brianna E. Forrest ◽  
Garren R. Granec ◽  
John D. Larrimore ◽  
Anna E. Morse ◽  
...  
Keyword(s):  
Mycobacterium Smegmatis ◽  
Complete Genome ◽  
Host Bacterium ◽  
Genome Sequences ◽  
Content Type

Mycobacteriophages Candle, Schatzie, Sumter, and Waleliano were isolated from soil using the host bacterium Mycobacterium smegmatis mc2155. Candle, Schatzie, and Sumter were discovered in Alabama and Waleliano in Maryland. The bacteriophages have been assigned clusters based on nucleotide similarity, as follows: Candle, R; Schatzie, J; Sumter, A1; and Waleliano, B4.

scholarly journals Draft Genome Sequences of Plant-Pathogenic Klebsiella variicola Strains Isolated from Plantain in Haiti

2020 ◽  
Vol 9 (29) ◽  
Author(s):  
James C. Fulton ◽  
Jeannie M. Klein ◽  
Sladana Bec ◽  
Joubert Fayette ◽  
Karen A. Garrett ◽  
...  
Keyword(s):  
Type Strain ◽  
Draft Genome ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Genome Sequences ◽  
Content Type

ABSTRACT The genus Klebsiella includes pathogenic and nonpathogenic species. We report the 5.57-Mb genome sequences of two Klebsiella variicola strains, G18-1365 and G18-1376, isolated from symptomatic plantain plants in Haiti. These strains are genetically closely related (average nucleotide identity [ANI] > 99%) to the previously described type strain of K. variicola, DSM 15968.

scholarly journals Full-Genome Sequencing of a Virus from a 33-Year-Old Sample Demonstrates that Arracacha Mottle Virus Is Synonymous with Arracacha Virus Y

2018 ◽  
Vol 7 (21) ◽  
Author(s):  
Ian P. Adams ◽  
Neil Boonham ◽  
Roger A. C. Jones
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Mottle Virus ◽  
Nucleotide Identity ◽  
Full Genome ◽  
Full Genome Sequencing ◽  
Genome Sequences ◽  
Content Type

We describe here the first genome sequence of Arracacha virus Y (ArVY) derived from an arracacha (Arracacia xanthorrhiza) sample originally collected in 1976 in Peru and compare it with other potyvirus genome sequences. It had a 79% nucleotide identity with a 2013 Brazilian Arracacha mottle virus (AMoV) sequence, suggesting that AMoV is ArVY.

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