Description of Calcaridorylaimus heynsi n. sp. (Nematoda: Dorylaimidae) from Potchefstroom, South Africa

Nematology ◽  
2020 ◽  
Vol 22 (8) ◽  
pp. 855-865
Author(s):  
Antoinette Swart ◽  
Hendrika Fourie ◽  
Louwrens R. Tiedt ◽  
Milad Rashidifard
Keyword(s):  
South Africa ◽  
Phylogenetic Analysis ◽  
New Species ◽  
18S Rdna ◽  
Molecular Techniques ◽  
28S Rdna ◽  
Median Line ◽  
Rdna Sequences ◽  
28S Rdna Sequences ◽  
Short Body

Summary Calcaridorylaimus heynsi n. sp. is the second species of the genus to be described by both morphological and molecular techniques. Morphologically, it can be distinguished from all known species of Calcaridorylaimus by a combination of the following characters: presence of advulval ornamentations, short body (0.90-1.33 mm), slightly anteriorly positioned vulva (V = 47.6 (45.8-49.8)), short odontostyle in females and males (13.1 (11.5-14.5) μm and 13.5 (12.0-18.0) μm, respectively), number of supplements (2 + 9-11), short spicules when measured along the median line (40.4 (38-42) μm) and pore-like vulval opening. It is closest to C. sirgeli, especially in the presence of advulval ornamentations and the pore-like vulva. Phylogenetic analysis based on partial D2-D3 segment of 28S rDNA sequences showed that C. heynsi n. sp. is in a well-supported sister relation with Mesodorylaimus sp. in a clade with C. cignatus and Mesodorylaimus spp. In the Bayesian tree, using partial sequences 18S rDNA, M. japonicus was the closest taxon to the new species.

scholarly journals Mexicana rubra sp. nov. and Encotyllabe cf. spari Yamaguti, 1934 (Monogenea) of Orthopristis ruber (Cuvier, 1830) from the Brazilian Coast off Rio de Janeiro

2017 ◽  
Vol 54 (4) ◽  
pp. 336-347
Author(s):  
A. C. A. Camargo ◽  
J. L. Luque ◽  
C. P. Santos
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Rio De Janeiro ◽  
Genetic Data ◽  
28S Rdna ◽  
Brazilian Coast ◽  
Diagnostic Features ◽  
Rdna Sequences ◽  
28S Rdna Sequences ◽  
Partial 18S

Summary Mexicana rubra sp. nov. and Encotyllabe cf. spari are described from the gills of the marine fish Orthopristis ruber (Haemulidae) caught off Rio de Janeiro, Brazil. Morphological, ultrastructural and genetic data are provided. The main diagnostic features of this new species of ectoparasite are a posteriorly bipartite testis, a ventral bar with three deep bowed projections and a dorsal bar with two deep, conspicuous, antero-lateral indentations. Genetic data on Mexicana rubra sp. nov. are based on the ITS1, 5.8S and partial 18S and 28S rDNA. This is the sixth known species of Mexicana Caballero & Bravo-Hollis, 1959, a key to which is also presented. Encotyllabe cf. spari Yamaguti, 1934 is described from the same host, with new ultrastructural data and new partial 18S and 28S rDNA sequences. A phylogenetic analysis based on partial 18S and 28S sequences is undertaken for both species.

Mucor cheongyangensis, a new species isolated from the surface of Lycorma delicatula in Korea

Phytotaxa ◽  
2020 ◽  
Vol 446 (1) ◽  
pp. 33-42
Author(s):  
THUONG T. T. NGUYEN ◽  
HYANG BURM LEE
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Internal Transcribed Spacer ◽  
Large Subunit ◽  
28S Rdna ◽  
Fungal Taxon ◽  
Rdna Sequences ◽  
Lycorma Delicatula ◽  
28S Rdna Sequences ◽  
A New Species

A new species of Mucor, isolated from the surface of Lycorma delicatula collected at Cheongyang in the Chungnam Province of Korea, is described and compared with morphologically similar taxa. The phylogenetic analysis of the internal transcribed spacer (ITS) and the large subunit (28S) rDNA sequences revealed that this isolate is closely related to M. orantomantidis and M. guilliermondii. However, the new isolate differs from those by having larger sporangia (24.5–125 × 23.5–120 µm), rhizoid-like structures, and production of secondary sporangia from vesicles outside of the original sporangium. Here, this novel fungal taxon is proposed as Mucor cheongyangensis sp. nov.

Generic classification of some more hyphomycetes with solitary conidia borne on phialides

1998 ◽  
Vol 76 (9) ◽  
pp. 1570-1583 ◽  
Author(s):  
W Gams ◽  
K O'Donnell ◽  
H -J Schroers ◽  
M Christensen
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Elongation Factor ◽  
28S Rdna ◽  
New Combination ◽  
Rdna Sequences ◽  
28S Rdna Sequences ◽  
Three New Species ◽  
Morphological Species

Unlike most phialide-producing fungi that liberate a multiplicity of conidia from each conidiogenous cell, only single conidia are formed on phialide-like conidiogenous cells in Aphanocladium, Verticimonosporium, and some species of Sibirina. A group of isolates obtained from soil of native Artemisia tridentata (sagebrush) grassland in Wyoming and from desert soil in Iraq is compared with these genera and classified as a fourth genus, Stanjemonium, honouring Stanley J. Hughes. Phylogenetic analyses of partial nuclear small- (18S) and large-subunit (28S) rDNA sequences indicate that Stanjemonium spp. form a monophyletic group with Emericellopsis. Sequences from the nuclear 18S and 28S rDNA were too conserved to resolve morphological species of Stanjemonium; however, phylogenetic analysis of b-tubulin and translation elongation factor 1a gene exons and introns resolved all species distinguished morphologically. Numerous conidiogenous cells or denticles are scattered along the cells of aerial hyphae in Aphanocladium and Stanjemonium spp., very rapidly collapsing into denticles in the former, somewhat more persistent and leaving broad scars in the latter. In Cladobotryum-Sibirina and Verticimonosporium spp., conidiogenous cells are discrete in terminal and intercalary whorls; phialides of the latter taxon are particularly swollen. The taxonomy of Aphanocladium is not yet resolved. Two species are recognized in Verticimonosporium. Three new species of Stanjemonium are described, and one new combination from Aphanocladium is proposed, along with one new species of Cladobotryum.Key words: Aphanocladium, Cladobotryum, conidiogenesis, hyphomycetes, molecular phylogeny, phialide, Stanjemonium, systematics, Verticimonosporium.

scholarly journals Internal phylogeny of the Chilopoda (Myriapoda, Arthropoda) using complete 18S rDNA and partial 28S rDNA sequences

1999 ◽  
Vol 354 (1380) ◽  
pp. 215-222 ◽  
Author(s):  
Gonzalo Giribet ◽  
Salvador Carranza ◽  
Marta Riutort ◽  
Jaume Baguñà ◽  
Carles Ribera
Keyword(s):  
18S Rdna ◽  
Gene Sequence ◽  
Sequence Data ◽  
Phylogenetic Reconstruction ◽  
Strong Support ◽  
28S Rdna ◽  
Rdna Sequences ◽  
Mode Of Life ◽  
Branch Support ◽  
28S Rdna Sequences

The internal phylogeny of the ‘myriapod’ class Chilopoda is evaluated for 12 species belonging to the five extant centipede orders, using 18S rDNA complete gene sequence and 28S rDNA partial gene sequence data. Equally and differentially weighted parsimony, neighbour–joining and maximum–likelihood were used for phylogenetic reconstruction, and bootstrapping and branch support analyses were performed to evaluate tree topology stability. The results show that the Chilopoda constitute a monophyletic group that is divided into two lines, Notostigmophora (= Scutigeromorpha) and Pleurostigmophora, as found in previous morphological analyses. The Notostigmophora are markedly modified for their epigenic mode of life. The first offshoot of the Pleurostigmophora are the Lithobiomorpha, followed by the Craterostigmomorpha and by the Epimorpha s. str. (= Scolopendromorpha + Geophilomorpha), although strong support for the monophyly of the Epimorpha s. lat. (= Craterostigmomorpha + Epimorpha s. str.) is only found in the differentially weighted parsimony analysis.

Description of Pratylenchoides ojcowensis sp. nov. (Nematoda: Merlinidae) from Polish Jurassic Highland

Zootaxa ◽  
2020 ◽  
Vol 4742 (1) ◽  
pp. 117-128
Author(s):  
GRAŻYNA WINISZEWSKA ◽  
RENATA DOBOSZ ◽  
TADEUSZ MALEWSKI ◽  
ANDRZEJ SKWIERCZ
Keyword(s):  
New Species ◽  
Middle Part ◽  
The Body ◽  
28S Rdna ◽  
Body Contour ◽  
Lateral Field ◽  
Female Head ◽  
Rdna Sequences ◽  
The Status ◽  
28S Rdna Sequences

A new species of the genus Pratylenchoides has been described. It was found in Polish Jurassic Highland, in Ojców National Park. Pratylenchoides ojcowensis sp. nov. was isolated from the soil located around tangled roots of Elymus sp. and Trifolium sp. This species is marked by a conical head in both females and males which is not separated from the body contour and has with 4–5 annuli; a relatively short stylet (20.3–21.3 µm females, 17.7–20.9 µm males) with oval knobs directed posteriorly; the dorsal pharyngeal nucleus located anterior to the cardia (the subventral pharyngeal nuclei located posterior; a pharyngeal lobe of length about two body widths (1.8–2.6); a lateral field with 6 lines in the middle part of body and sometimes with partially areolated outer bands; intestinal fasciculi present; round sperm in the spermatheca in females; a female tail with a maximum of 29 annuli, and an annulated tail terminus. The status of the new species has been verifiied by DNA sequencing and phylogenetic analysis of the 28S rDNA region. The results obtained in the study indicated that P. ojcowensis sp. nov. is most related to P. alkani, P. ritteri and P. nevadensis from which is distinguished by the shape of the female head (conoid vs rounded), shorter stylet in females (20.3–21.3 µm vs 22.0–25.0 µm, 21.0–25.0 µm, 22.0–26.0 µm) and differences in 28S rDNA sequences. In addition (as per the original descriptions Yüksel 1977, Sher 1970, Talavera & Tobar 1996) it is distinguished from P. alkani by smaller number of male’s head annuli (4–5 vs 7–9), from P. ritteri it is distinguished by posteriorly directed stylet knobs (vs directed laterally), from P. nevadensis it is distinguished by oval and posteriorly directed stylet knobs (vs rounded and directed laterally). 

Phylogenetic analysis of the Monocotylidae (Monogenea) inferred from 28S rDNA sequences

2001 ◽  
Vol 31 (13) ◽  
pp. 1537-1547 ◽  
Author(s):  
Leslie A. Chisholm ◽  
Jess A.T. Morgan ◽  
Rob D. Adlard ◽  
Ian D. Whittington
Keyword(s):  
Phylogenetic Analysis ◽  
28S Rdna ◽  
Rdna Sequences ◽  
28S Rdna Sequences

A new species of Auriculostoma (Trematoda: Allocreadiidae) from the intestine of Brycon guatemalensis (Characiformes: Bryconidae) from the Usumacinta River Basin, Mexico, based on morphology and 28S rDNA sequences, with a key to species of the genus

Zootaxa ◽  
2016 ◽  
Vol 4196 (2) ◽  
pp. 261 ◽  
Author(s):  
DAVID IVÁN HERNÁNDEZ-MENA ◽  
CHRISTINA LYNGGAARD ◽  
BERENIT MENDOZA-GARFIAS ◽  
GERARDO PÉREZ-PONCE DE LEÓN
Keyword(s):  
New Species ◽  
Geographical Distribution ◽  
Genetic Divergence ◽  
28S Rdna ◽  
The Other ◽  
Sister Taxon ◽  
Host Association ◽  
Rdna Sequences ◽  
28S Rdna Sequences ◽  
A New Species

We describe a new species of Auriculostoma Scholz, Aguirre-Macedo & Choudhury, 2004 based on several sources of information including morphology (light and scanning electron microscopy [SEM]), sequences of two nuclear genes, host association, and geographical distribution. Morphologically, the new species most closely resembles Auriculostoma astyanace Scholz, Aguirre-Macedo & Choudhury, 2004, but differs by having deeply lobated testes and cirrus-sac extending posteriorly to seminal receptacle level. Auriculostoma lobata n. sp. can be readily distinguished from all the other congeners by the combination of the following characters: testes located in tandem, testes deeply lobated, and larger body size. A phylogenetic analysis using 28S rDNA sequences along with those available for other allocreadiid trematodes, revealed that the new species is a sister taxon of A. astyanace, a species described from the banded astyanax, Astyanax fasciatus (Cuvier) in Nicaragua. Auriculostoma totonacapanensis Razo-Mendivil, Mendoza-Garfias, Pérez-Ponce de León & Rubio-Godoy, 2014 from the Mexican tetra, Astyanax mexicanus (De Filippi) in Mexico is the sister taxon of A. astyanace plus the new species. Genetic divergence levels for the 28S rDNA and ITS2 were estimated among the Middle-American species of Auriculostoma infecting characiforms. The validity of the new species is then established by reliable morphological differences, its host association to bryconids (Brycon guatemalensis Regan), restricted geographical distribution (Usumacinta and Lacantun River basins), and genetic divergence levels, albeit relatively low. A morphometric comparison between the new species and the other seven congeneric species was undertaken and, in addition, a taxonomic key to identify the species contained in the genus Auriculostoma, widely distributed across the Americas, is provided. 

scholarly journals Erysiphe deutziicola sp. nov. (Erysiphaceae, Ascomycota), a powdery mildew species found on Deutzia parviflora (Hydrangeaceae) with unusual appendages

MycoKeys ◽  
2019 ◽  
Vol 51 ◽  
pp. 97-106
Author(s):  
Peng-Lei Qiu ◽  
Uwe Braun ◽  
Yu Li ◽  
Shu-Yan Liu
Keyword(s):  
New Species ◽  
Powdery Mildew ◽  
Microscopic Examination ◽  
Phylogenetic Analyses ◽  
28S Rdna ◽  
Bootstrap Support ◽  
Rdna Sequences ◽  
28S Rdna Sequences ◽  
Beijing China ◽  
Ornamental Shrub

A powdery mildew (Erysiphales) has recently been collected on leaves of an ornamental shrub Deutziaparviflora in Baihua Mountain, Beijing, China. Microscopic examination of the chasmothecia suggested a species belonging to Erysiphesect.Erysiphe, above all due to mycelioid chasmothecial appendages, although circinate apices of the appendages were rather in favour of Erysiphesect.Uncinula, which is a fairly rare combination of appendage characteristics in Erysiphe. Phylogenetic analyses of ITS and 28S rDNA sequences demonstrated that the two examined powdery mildew collections on D.parviflora clustered together as an independent lineage within Erysiphe with 100% bootstrap support, representing a species of its own, which is phylogenetically allied to, but clearly distinct from Erysiphedeutziae and, in addition, morphologically quite different from all known Erysiphe species on hosts belonging to the Hydrangeaceae. The new species on D.parviflora is described as Erysiphedeutziicola.

Phylogenetic relationships of the lower Cyclorrhapha (Diptera: Brachycera) based on 28S rDNA sequences

2002 ◽  
Vol 33 (4) ◽  
pp. 445-456 ◽  
Author(s):  
Brian M. Wiegmann ◽  
Kenneth P. Collins
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Relationships ◽  
Phylogenetic Analyses ◽  
Sister Group ◽  
28S Rdna ◽  
Morphological Data ◽  
Monophyletic Clade ◽  
Rdna Sequences ◽  
28S Rdna Sequences

AbstractCyclorrhaphan Diptera are an extremely successful clade of ecologically and phylogenenetically important flies. Despite their significance the relationships among lower cyclorrhaphans ('Aschiza') remain controversial in spite of several morphologically based phylogenetic analyses. We sequenced a 2.7-kb fragment of 28S rDNA for taxa representing all lower cyclorrhaphan families (except Ironomyiidae), four schizophoran families, and seven empidoid out-group taxa. Phylogenetic analysis of these data strongly supports a monophyletic Cyclorrhapha (including the enigmatic taxon Opetia nigra) that is divided into two clades - a well-supported Eumuscomorpha (Syrphidae + Pipunculidae + Schizophora), and a weakly-supported Platypezoidea (all non-Eumuscomorpha). Consequently, the former grouping known as Aschiza, which included syrphids and pipunculids, is not a valid monophyletic clade. Within Platypezoidea, most of our analyses place Lonchopteridae as sister group to Opetiidae, and strongly support the monophyly of Sciadoceridae + Phoridae. Among the Eumuscomorpha we do not recover the monophyly of Syrphoidea (Syrphidae + Pipunculidae). Instead, all analyses place Pipunculidae as the sister group to Schizophora. This novel finding has never been proposed based on morphological data and will require more data (both molecular and morphological) and taxa to confirm.

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