A bioinformatics approach for the interrogation of molecular events in single cells: transforming fluorescent time-lapse microscopy images into numbers

BMC Systems Biology ◽

10.1186/1752-0509-1-s1-p31 ◽

2007 ◽

Vol 1 (S1) ◽

Author(s):

Imtiaz Khan ◽

Janet Fisher ◽

Nuria Marquez ◽

Paul Smith ◽

Rachel Errington

Keyword(s):

Single Cells ◽

Time Lapse Microscopy ◽

Molecular Events ◽

Microscopy Images

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Automated monitoring of human embryonic cells up to the 5-cell stage in time-lapse microscopy images

2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI) ◽

10.1109/isbi.2015.7163894 ◽

2015 ◽

Author(s):

Aisha Khan ◽

Stephen Gould ◽

Mathieu Salzmann

Keyword(s):

Embryonic Cells ◽

Automated Monitoring ◽

Time Lapse Microscopy ◽

Microscopy Images

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Tracking Multiple Particles in Fluorescence Time-Lapse Microscopy Images via Probabilistic Data Association

IEEE Transactions on Medical Imaging ◽

10.1109/tmi.2014.2359541 ◽

2015 ◽

Vol 34 (2) ◽

pp. 415-432 ◽

Author(s):

William J. Godinez ◽

Karl Rohr

Keyword(s):

Data Association ◽

Probabilistic Data ◽

Probabilistic Data Association ◽

Time Lapse Microscopy ◽

Multiple Particles ◽

Microscopy Images

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Sequence-level Supervised Deep Neural Networks for Mitosis Event Detection in Time-Lapse Microscopy Images

2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) ◽

10.1109/bibm49941.2020.9313500 ◽

2020 ◽

Author(s):

Siteng Chen ◽

Ao Li ◽

Janet Roveda

Keyword(s):

Neural Networks ◽

Event Detection ◽

Deep Neural Networks ◽

Time Lapse Microscopy ◽

Microscopy Images

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The chaotic behavior of the endoplasmic-reticulum network in time-lapse microscopy images

2013 IEEE International Conference on Bioinformatics and Biomedicine ◽

10.1109/bibm.2013.6732584 ◽

2013 ◽

Author(s):

Tuan D. Pham

Keyword(s):

Endoplasmic Reticulum ◽

Chaotic Behavior ◽

Time Lapse Microscopy ◽

Microscopy Images

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Multi-Object Dynamic Memory Network For Cell Tracking in Time-Lapse Microscopy Images

2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI) ◽

10.1109/isbi48211.2021.9433828 ◽

2021 ◽

Author(s):

Ran Li ◽

Qi Gao ◽

Karl Rohr

Keyword(s):

Cell Tracking ◽

Dynamic Memory ◽

Time Lapse Microscopy ◽

Memory Network ◽

Object Dynamic ◽

Microscopy Images

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Trend Training Based RNN for Human Induced Pluripotent Stem Cell Reprogramming Prediction Using Time-Lapse Microscopy Images

2020 IEEE 20th International Conference on Bioinformatics and Bioengineering (BIBE) ◽

10.1109/bibe50027.2020.00031 ◽

2020 ◽

Author(s):

Slo-Li Chu ◽

Shao-Yu Sung ◽

Ming-Dar Tsai ◽

Kuniya Abe ◽

Kazuhiro Sudo ◽

...

Keyword(s):

Stem Cell ◽

Pluripotent Stem Cell ◽

Induced Pluripotent Stem Cell ◽

Cell Reprogramming ◽

Time Lapse Microscopy ◽

Induced Pluripotent ◽

Microscopy Images

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An active particle-based tracking framework for 2D and 3D time-lapse microscopy images

2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society ◽

10.1109/iembs.2011.6091631 ◽

2011 ◽

Author(s):

M. J. Hossain ◽

P. F. Whelan ◽

A. Czirok ◽

O. Ghita

Keyword(s):

Active Particle ◽

Time Lapse Microscopy ◽

2D And 3D ◽

Microscopy Images

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Automatically Improving Cell Segmentation in Time-Lapse Microscopy Images Using Temporal Context From Tracking and Lineaging

10.17918/etd-7762 ◽

2021 ◽

Author(s):

Mark Winter

Keyword(s):

Cell Segmentation ◽

Temporal Context ◽

Time Lapse Microscopy ◽

Microscopy Images

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Deep Semantic Edge for Cell Counting and Localization in Time-Lapse Microscopy Images

10.1007/978-3-030-88010-1_28 ◽

2021 ◽

pp. 337-349

Author(s):

Tianwei Zhang ◽

Kun Sun

Keyword(s):

Cell Counting ◽

Time Lapse Microscopy ◽

Microscopy Images

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Through the Looking Glass: Time-lapse Microscopy and Longitudinal Tracking of Single Cells to Study Anti-cancer Therapeutics

Journal of Visualized Experiments ◽

10.3791/53994 ◽

2016 ◽

Author(s):

Russell T. Burke ◽

James D. Orth

Keyword(s):

Single Cells ◽

Cancer Therapeutics ◽

Time Lapse Microscopy ◽

Longitudinal Tracking ◽

Anti Cancer ◽

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