scholarly journals Improving protein complex prediction by reconstructing a high-confidence protein-protein interaction network of Escherichia coli from different physical interaction data sources

2017 ◽  
Vol 18 (1) ◽  
Author(s):  
Shirin Taghipour ◽  
Peyman Zarrineh ◽  
Mohammad Ganjtabesh ◽  
Abbas Nowzari-Dalini
Keyword(s):  
Escherichia Coli ◽  
Protein Interaction Network ◽  
Interaction Network ◽  
Data Sources ◽  
Physical Interaction ◽  
Interaction Data ◽  
High Confidence ◽  
Protein Protein Interaction ◽  
Protein Complex Prediction ◽  
Protein Protein Interaction Network

scholarly journals Protein-protein interaction network topology as a measure of bacterial plasmid-chromosome co-evolution

2019 ◽  
Author(s):  
Nghia T.H. Tran ◽  
Arun Decano ◽  
Tim Downing ◽  
Alexander D. Rahm
Keyword(s):  
Escherichia Coli ◽  
Protein Interaction ◽  
Network Topology ◽  
Protein Interaction Network ◽  
Interaction Network ◽  
Gene Interactions ◽  
Protein Protein Interaction ◽  
Chromosome Gene ◽  
Bacterial Plasmid ◽  
Protein Protein Interaction Network

AbstractIn this work, we investigate the evolvability of plasmids by examining the topology of plasmid-chromosome gene interactions in Escherichia coli ST131. We discover a convergence of the ratio of non-trivial loops per protein-protein interaction, which allows us to introduce a new invariant of bacterial PPINs: the indirect connectivity value.

scholarly journals Diabetic Retinopathy and Laser Therapy in Rats: A Protein-Protein Interaction Network Analysis

2017 ◽  
Vol 8 (Suppl 1) ◽  
pp. S20-S21 ◽  
Author(s):  
Akram Safaei ◽  
Mostafa Rezaei Tavirani ◽  
Mona Zamanian Azodi ◽  
Alireza Lashay ◽  
Seyed Farzad Mohammadi ◽  
...  
Keyword(s):  
Diabetic Retinopathy ◽  
Network Analysis ◽  
Laser Therapy ◽  
Protein Interaction ◽  
Protein Interaction Network ◽  
Interaction Network ◽  
Protein Protein Interaction ◽  
Protein Protein Interaction Network
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