scholarly journals Shortest path counting in probabilistic biological networks

2018 ◽  
Vol 19 (1) ◽  
Author(s):  
Yuanfang Ren ◽  
Ahmet Ay ◽  
Tamer Kahveci
2020 ◽  
Vol 171 ◽  
pp. 755-760
Author(s):  
Nandini J Warrier ◽  
Daphna Chacko ◽  
K Murali Krishnan

2021 ◽  
Vol 14 (7) ◽  
pp. 1188-1201
Author(s):  
Arkaprava Saha ◽  
Ruben Brokkelkamp ◽  
Yllka Velaj ◽  
Arijit Khan ◽  
Francesco Bonchi

Computing the shortest path between a pair of nodes is a fundamental graph primitive, which has critical applications in vehicle routing, finding functional pathways in biological networks, survivable network design, among many others. In this work, we study shortest-path queries over uncertain networks, i.e., graphs where every edge is associated with a probability of existence. We show that, for a given path, it is # P -hard to compute the probability of it being the shortest path, and we also derive other interesting properties highlighting the complexity of computing the Most Probable Shortest Paths (MPSPs). We thus devise sampling-based efficient algorithms, with end-to-end accuracy guarantees, to compute the MPSP. As a concrete application, we show how to compute a novel concept of betweenness centrality in an uncertain graph using MPSPs. Our thorough experimental results and rich real-world case studies on sensor networks and brain networks validate the effectiveness, efficiency, scalability, and usefulness of our solution.


Author(s):  
Achmad Fanany Onnilita Gaffar ◽  
Agusma Wajiansyah ◽  
Supriadi Supriadi

The shortest path problem is one of the optimization problems where the optimization value is a distance. In general, solving the problem of the shortest route search can be done using two methods, namely conventional methods and heuristic methods. The Ant Colony Optimization (ACO) is the one of the optimization algorithm based on heuristic method. ACO is adopted from the behavior of ant colonies which naturally able to find the shortest route on the way from the nest to the food sources. In this study, ACO is used to determine the shortest route from Bumi Senyiur Hotel (origin point) to East Kalimantan Governor's Office (destination point). The selection of the origin and destination points is based on a large number of possible major roads connecting the two points. The data source used is the base map of Samarinda City which is cropped on certain coordinates by using Google Earth app which covers the origin and destination points selected. The data pre-processing is performed on the base map image of the acquisition results to obtain its numerical data. ACO is implemented on the data to obtain the shortest path from the origin and destination point that has been determined. From the study results obtained that the number of ants that have been used has an effect on the increase of possible solutions to optimal. The number of tours effect on the number of pheromones that are left on each edge passed ant. With the global pheromone update on each tour then there is a possibility that the path that has passed the ant will run out of pheromone at the end of the tour. This causes the possibility of inconsistent results when using the number of ants smaller than the number of tours.


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