scholarly journals Modelling and identification of characteristic kinematic features preceding freezing of gait with convolutional neural networks and layer-wise relevance propagation

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Benjamin Filtjens ◽  
Pieter Ginis ◽  
Alice Nieuwboer ◽  
Muhammad Raheel Afzal ◽  
Joke Spildooren ◽  
...  

Abstract Background Although deep neural networks (DNNs) are showing state of the art performance in clinical gait analysis, they are considered to be black-box algorithms. In other words, there is a lack of direct understanding of a DNN’s ability to identify relevant features, hindering clinical acceptance. Interpretability methods have been developed to ameliorate this concern by providing a way to explain DNN predictions. Methods This paper proposes the use of an interpretability method to explain DNN decisions for classifying the movement that precedes freezing of gait (FOG), one of the most debilitating symptoms of Parkinson’s disease (PD). The proposed two-stage pipeline consists of (1) a convolutional neural network (CNN) to model the reduction of movement present before a FOG episode, and (2) layer-wise relevance propagation (LRP) to visualize the underlying features that the CNN perceives as important to model the pathology. The CNN was trained with the sagittal plane kinematics from a motion capture dataset of fourteen PD patients with FOG. The robustness of the model predictions and learned features was further assessed on fourteen PD patients without FOG and fourteen age-matched healthy controls. Results The CNN proved highly accurate in modelling the movement that precedes FOG, with 86.8% of the strides being correctly identified. However, the CNN model was unable to model the movement for one of the seven patients that froze during the protocol. The LRP interpretability case study shows that (1) the kinematic features perceived as most relevant by the CNN are the reduced peak knee flexion and the fixed ankle dorsiflexion during the swing phase, (2) very little relevance for FOG is observed in the PD patients without FOG and the healthy control subjects, and (3) the poor predictive performance of one subject is attributed to the patient’s unique and severely flexed gait signature. Conclusions The proposed pipeline can aid clinicians in explaining DNN decisions in clinical gait analysis and aid machine learning practitioners in assessing the generalization of their models by ensuring that the predictions are based on meaningful kinematic features.

2015 ◽  
Vol 42 ◽  
pp. S37
Author(s):  
M. Alvela ◽  
M. Bergmann ◽  
M.-L. Ööpik ◽  
Ü. Kruus ◽  
K. Englas ◽  
...  

2017 ◽  
Vol 52 ◽  
pp. 1-4 ◽  
Author(s):  
Stephanie L. King ◽  
Gabor J. Barton ◽  
Lakshminarayan R. Ranganath

2019 ◽  
Vol 26 (6) ◽  
pp. 9-9
Author(s):  
Bradley Stephen Neal ◽  
Simon David Lack ◽  
Christian John Barton ◽  
Alexandra Birn-Jeffrey ◽  
Stuart Miller ◽  
...  

Background/Aims Peak hip adduction and knee flexion during running are associated with patellofemoral pain persistence, representing treatment targets. Clinical practice is lacking a validated, reliable tool with which to measure these kinematics. This study aimed to determine the accuracy of clinical gait analysis, by investigating concurrent validity, intra- and inter-rater reliability of two-dimensional video. Methods A total of 21 participants with patellofemoral pain were recruited (10 males, 11 females). Synchronised three-dimensional and two-dimensional kinematic data were collected during over-groundrunning. Two-dimensional videos were analysed with the Hudl Technique application using a commercially available tablet (iPad). Single measure intraclass coreelation coefficients (ICCs) were calculated using a two-way mixed effects model with absolute agreement. Three-dimensional peak hip internal rotation was investigated as a covariate with backward linear regression, using the F change statistic. Results There was poor agreement between three-dimensional and two-dimensional measurement of peak hip adduction (ICC 0.06) and peak knee flexion (ICC 0.42). Moderate intra-rater reliability was identified for both variables (ICC 0.61–0.65). Inter-rater reliability for peak knee flexion was moderate (ICC 0.71), but was poor for peak hip adduction (ICC 0.31). Three-dimensional peak hip internal rotation did not significantly explain the identified poor agreement for either variable. Conclusions Poor agreement between three-dimensional kinematics and two-dimensional video was identified for both variables in runners with patellofemoral pain, despite acceptable intra-rater reliability. Investigation of software with increased precision is warranted, to improve the accuracy of two-dimensional video predicting three-dimensional kinematics in the clinical setting. Clinical gait analysis using the Hudl Technique application is not currently advocated.


2021 ◽  
Author(s):  
Rawan AlSaad ◽  
Qutaibah Malluhi ◽  
Sabri Boughorbel

Abstract Background: Early identification of pregnant women at risk for preterm birth (PTB), a major cause of infant mortality and morbidity, has a significant potential to improve prenatal care. However, we lack effective predictive models which can accurately forecast PTB and complement these predictions with appropriate interpretations for clinicians. In this work, we introduce a clinical prediction model (PredictPTB) which combines variables (medical codes) readily accessible through electronic health record (EHR) to accurately predict the risk of preterm birth at 1, 3, 6, and 9 months prior to delivery. Methods: The architecture of PredictPTB employs recurrent neural networks (RNNs) to model the longitudinal patient's EHR visits and exploits a single code-level attention mechanism to improve the predictive performance, while providing temporal code-level and visit-level explanations for the prediction results. We compare the performance of different combinations of prediction time-points, data modalities, and data windows. We also present a case-study of our model's interpretability illustrating how clinicians can gain some transparency into the predictions. Results: Leveraging a large cohort of 222,436 deliveries, comprising a total of 27,100 unique clinical concepts, our model was able to predict preterm birth with an ROC-AUC of 0.82, 0.79, 0.78, and PR-AUC of 0.40, 0.31, 0.24, at 1, 3, and 6 months prior to delivery, respectively. Results also confirm that observational data modalities (such as diagnoses) are more predictive for preterm birth than interventional data modalities (e.g., medications and procedures). Conclusions: Our results demonstrate that PredictPTB can be utilized to achieve accurate and scalable predictions for preterm birth, complemented by explanations that directly highlight evidence in the patient's EHR timeline.


2019 ◽  
Author(s):  
Chem Int

Recently, process control in wastewater treatment plants (WWTPs) is, mostly accomplished through examining the quality of the water effluent and adjusting the processes through the operator’s experience. This practice is inefficient, costly and slow in control response. A better control of WTPs can be achieved by developing a robust mathematical tool for performance prediction. Due to their high accuracy and quite promising application in the field of engineering, Artificial Neural Networks (ANNs) are attracting attention in the domain of WWTP predictive performance modeling. This work focuses on applying ANN with a feed-forward, back propagation learning paradigm to predict the effluent water quality of the Habesha brewery WTP. Data of influent and effluent water quality covering approximately an 11-month period (May 2016 to March 2017) were used to develop, calibrate and validate the models. The study proves that ANN can predict the effluent water quality parameters with a correlation coefficient (R) between the observed and predicted output values reaching up to 0.969. Model architecture of 3-21-3 for pH and TN, and 1-76-1 for COD were selected as optimum topologies for predicting the Habesha Brewery WTP performance. The linear correlation between predicted and target outputs for the optimal model architectures described above were 0.9201 and 0.9692, respectively.


Author(s):  
Abeer A. Amer ◽  
Soha M. Ismail

The following article has been withdrawn on the request of the author of the journal Recent Advances in Computer Science and Communications (Recent Patents on Computer Science): Title: Diabetes Mellitus Prognosis Using Fuzzy Logic and Neural Networks Case Study: Alexandria Vascular Center (AVC) Authors: Abeer A. Amer and Soha M. Ismail* Bentham Science apologizes to the readers of the journal for any inconvenience this may cause BENTHAM SCIENCE DISCLAIMER: It is a condition of publication that manuscripts submitted to this journal have not been published and will not be simultaneously submitted or published elsewhere. Furthermore, any data, illustration, structure or table that has been published elsewhere must be reported, and copyright permission for reproduction must be obtained. Plagiarism is strictly forbidden, and by submitting the article for publication the authors agree that the publishers have the legal right to take appropriate action against the authors, if plagiarism or fabricated information is discovered. By submitting a manuscript, the authors agree that the copyright of their article is transferred to the publishers if and when the article is accepted for publication.


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