scholarly journals Structural insight into the catalytic mechanism of arsenate reductase from Synechocystis sp. PCC 6803

Author(s):  
Y. Yan ◽  
J. Ye ◽  
X. Zhang ◽  
X.M. Xue ◽  
Y.G. Zhu
2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Anushree Bachhar ◽  
Jiri Jablonsky

AbstractPhosphoketolase (PKET) pathway is predominant in cyanobacteria (around 98%) but current opinion is that it is virtually inactive under autotrophic ambient CO2 condition (AC-auto). This creates an evolutionary paradox due to the existence of PKET pathway in obligatory photoautotrophs. We aim to answer the paradox with the aid of bioinformatic analysis along with metabolic, transcriptomic, fluxomic and mutant data integrated into a multi-level kinetic model. We discussed the problems linked to neglected isozyme, pket2 (sll0529) and inconsistencies towards the explanation of residual flux via PKET pathway in the case of silenced pket1 (slr0453) in Synechocystis sp. PCC 6803. Our in silico analysis showed: (1) 17% flux reduction via RuBisCO for Δpket1 under AC-auto, (2) 11.2–14.3% growth decrease for Δpket2 in turbulent AC-auto, and (3) flux via PKET pathway reaching up to 252% of the flux via phosphoglycerate mutase under AC-auto. All results imply that PKET pathway plays a crucial role under AC-auto by mitigating the decarboxylation occurring in OPP pathway and conversion of pyruvate to acetyl CoA linked to EMP glycolysis under the carbon scarce environment. Finally, our model predicted that PKETs have low affinity to S7P as a substrate.


2012 ◽  
Vol 1824 (2) ◽  
pp. 392-403 ◽  
Author(s):  
Sang Gon Kim ◽  
Jung-Sung Chung ◽  
R. Bryan Sutton ◽  
Jong-Sun Lee ◽  
Luis López-Maury ◽  
...  

2014 ◽  
Vol 70 (a1) ◽  
pp. C475-C475
Author(s):  
James Peek ◽  
Dinesh Christendat

The soil bacterium, Pseudomonas putida, is capable of using the alicyclic compound quinate as a sole carbon source. During this process, quinate is converted to 3-dehydroshikimate, which subsequently undergoes a dehydration to form protocatechuate. The latter transformation is performed by the enzyme dehydroshikimate dehydratase (DSD). We have recombinantly produced DSD from P. putida and are currently performing x-ray crystallographic studies on the enzyme to gain structural insight into its catalytic mechanism and mode of substrate recognition. Initial crystals of DSD diffracted to 2.7 Ä resolution, but exhibited strong twinning. A redesigned construct has recently yielded crystals that diffract to similar resolution, but with a significantly reduced tendency toward twinning. Interestingly, sequence analysis of P. putida DSD reveals that the protein is in fact a fusion of two distinct domains: an N-terminal sugar phosphate isomerase-like domain associated with DSD activity, and a C-terminal hydroxyphenylpyruvate dioxygenase (HPPD)-like domain with unknown functional significance. Structural characterization of the protein may provide novel insight into the functional relevance of the unusual HPPD-like domain.


2018 ◽  
Vol 54 (61) ◽  
pp. 8482-8485 ◽  
Author(s):  
Sheng Dong ◽  
Xi Liu ◽  
Gu-Zhen Cui ◽  
Qiu Cui ◽  
Xinquan Wang ◽  
...  

The catalytic mechanism for the high stereoselectivity and product enantioselectivity of a cis-epoxysuccinate hydrolase producing d(−)-tartaric acids was elucidated.


2003 ◽  
Vol 185 (23) ◽  
pp. 6780-6789 ◽  
Author(s):  
Renhui Li ◽  
January D. Haile ◽  
Peter J. Kennelly

ABSTRACT The deduced protein product of open reading frame slr0946 from Synechocystis sp. strain PCC 6803, SynArsC, contains the conserved sequence features of the enzyme superfamily that includes the low-molecular-weight protein-tyrosine phosphatases and the Staphylococcus aureus pI258 ArsC arsenate reductase. The recombinant protein product of slr0946, rSynArsC, exhibited vigorous arsenate reductase activity (V max = 3.1 μmol/min · mg), as well as weak phosphatase activity toward p-nitrophenyl phosphate (V max = 0.08 μmol/min · mg) indicative of its phosphohydrolytic ancestry. pI258 ArsC from S. aureus is the prototype of one of three distinct families of detoxifying arsenate reductases. The prototypes of the others are Acr2p from Saccharomyces cerevisiae and R773 ArsC from Escherichia coli. All three have converged upon catalytic mechanisms involving an arsenocysteine intermediate. While SynArsC is homologous to pI258 ArsC, its catalytic mechanism exhibited a unique combination of features. rSynArsC employed glutathione and glutaredoxin as the source of reducing equivalents, like Acr2p and R773 ArsC, rather than thioredoxin, as does the S. aureus enzyme. As postulated for Acr2p and R773 ArsC, rSynArsC formed a covalent complex with glutathione in an arsenate-dependent manner. rSynArsC contains three essential cysteine residues like pI258 ArsC, whereas the yeast and E. coli enzymes require only one cysteine for catalysis. As in the S. aureus enzyme, these “extra” cysteines apparently shuttle a disulfide bond to the enzyme's surface to render it accessible for reduction. SynArsC and pI258 ArsC thus appear to represent alternative branches in the evolution of their shared phosphohydrolytic ancestor into an agent of arsenic detoxification.


2005 ◽  
Vol 24 (23) ◽  
pp. 4082-4093 ◽  
Author(s):  
Mousheng Wu ◽  
Michael Reuter ◽  
Hauke Lilie ◽  
Yuying Liu ◽  
Elmar Wahle ◽  
...  

2017 ◽  
Vol 8 (1) ◽  
Author(s):  
Xu Han ◽  
Weidong Liu ◽  
Jian-Wen Huang ◽  
Jiantao Ma ◽  
Yingying Zheng ◽  
...  

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