A Statistical Model of Protein Sequence Similarity and Function Similarity Reveals Overly-Specific Function Predictions

Function Similarity ◽

And Function

Using bioinformatic protein sequence similarity to investigate if SARS CoV-2 infection could cause an ocular autoimmune inflammatory reactions?

Experimental Eye Research ◽

10.1016/j.exer.2020.108433 ◽

2021 ◽

Vol 203 ◽

pp. 108433

Author(s):

Işıl Kutlutürk Karagöz ◽

Marion R. Munk ◽

Mücahit Kaya ◽

René Rückert ◽

Mustafa Yıldırım ◽

...

Keyword(s):

Protein Sequence ◽

Sequence Similarity ◽

Inflammatory Reactions ◽

Computer Methods in Biomechanics and Biomedical Engineering Imaging & Visualization ◽

EightyDVec: a method for protein sequence similarity analysis using physicochemical properties of amino acids

10.1080/21681163.2021.1956369 ◽

2021 ◽

pp. 1-11

Author(s):

Ranjeet Kumar Rout ◽

Saiyed Umer ◽

Sabha Sheikh ◽

Sanchit Sindhwani ◽

Smitarani Pati

Keyword(s):

Amino Acids ◽

Physicochemical Properties ◽

Protein Sequence ◽

Sequence Similarity ◽

Similarity Analysis ◽

Sequence Similarity Analysis

Computational Intelligence in Medical Informatics - Studies in Computational Intelligence ◽

Language engineering and information theoretic methods in protein sequence similarity studies

10.1007/978-3-540-75767-2_8 ◽

2008 ◽

pp. 151-183 ◽

Cited By ~ 5

Author(s):

A. Bogan-Marta ◽

A. Hategan ◽

I. Pitas

Keyword(s):

Protein Sequence ◽

Sequence Similarity ◽

Language Engineering ◽

Information Theoretic ◽

Information Theoretic Methods

Investigating Correlation between Protein Sequence Similarity and Semantic Similarity Using Gene Ontology Annotations

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2017.2695542 ◽

2018 ◽

Vol 15 (3) ◽

pp. 905-912 ◽

Cited By ~ 1

Author(s):

Najmul Ikram ◽

Muhammad Abdul Qadir ◽

Muhammad Tanvir Afzal

Keyword(s):

Gene Ontology ◽

Semantic Similarity ◽

Protein Sequence ◽

Sequence Similarity ◽

A Frequency Domain Approach to Protein Sequence Similarity Analysis and Functional Classification

Signal & Image Processing An International Journal ◽

10.5121/sipij.2011.2104 ◽

2011 ◽

Vol 2 (1) ◽

pp. 36-49 ◽

Cited By ~ 3

Author(s):

Anu Sabarish.R ◽

Tessamma Thomas

Keyword(s):

Frequency Domain ◽

Protein Sequence ◽

Sequence Similarity ◽

Similarity Analysis ◽

Functional Classification ◽

Sequence Similarity Analysis ◽

Frequency Domain Approach

A Wavelet Transform Based Protein Sequence Similarity Model

Applied Mathematics & Information Sciences ◽

10.12785/amis/070330 ◽

2013 ◽

Vol 7 (3) ◽

pp. 1103-1110 ◽

Cited By ~ 5

Author(s):

Jie Su ◽

Junpeng Bao

Keyword(s):

Wavelet Transform ◽

Protein Sequence ◽

Sequence Similarity ◽

Similarity Model ◽

Protein sequence similarity searches using patterns as seeds

Nucleic Acids Research ◽

10.1093/nar/26.17.3986 ◽

1998 ◽

Vol 26 (17) ◽

pp. 3986-3990 ◽

Cited By ~ 198

Author(s):

Z Zhang

Keyword(s):

Protein Sequence ◽

Sequence Similarity ◽

Similarity Searches

PROCAIN server for remote protein sequence similarity search

Bioinformatics ◽

10.1093/bioinformatics/btp346 ◽

2009 ◽

Vol 25 (16) ◽

pp. 2076-2077 ◽

Cited By ~ 5

Author(s):

Y. Wang ◽

R. I. Sadreyev ◽

N. V. Grishin

Keyword(s):

Protein Sequence ◽

Similarity Search ◽

Sequence Similarity ◽

Sequence Similarity Search ◽

Classification of Myoviridae bacteriophages using protein sequence similarity

BMC Microbiology ◽

10.1186/1471-2180-9-224 ◽

2009 ◽

Vol 9 (1) ◽

pp. 224 ◽

Cited By ~ 185

Author(s):

Rob Lavigne ◽

Paul Darius ◽

Elizabeth J Summer ◽

Donald Seto ◽

Padmanabhan Mahadevan ◽

...

Keyword(s):

Protein Sequence ◽

Sequence Similarity ◽

2019 International Conference on Wavelet Analysis and Pattern Recognition (ICWAPR) ◽

Nd5 Protein Sequence Similarity Analysis Based On Discrete Wavelet Transform And Fractal Dimension

10.1109/icwapr48189.2019.8946464 ◽

2019 ◽

Author(s):

Xiaocui Dang ◽

Lina Yang ◽

Yuan Yan Tang ◽

Pu Wei ◽

Hailong Su

Keyword(s):

Fractal Dimension ◽

Wavelet Transform ◽

Discrete Wavelet Transform ◽

Protein Sequence ◽

Sequence Similarity ◽

Similarity Analysis ◽

Discrete Wavelet ◽

Sequence Similarity Analysis