Methods for Analyzing DNA Bending

DNA Topoisomerase Protocols ◽

10.1385/1-59259-259-7:109 ◽

2003 ◽

pp. 109-124 ◽

Author(s):

Jason D. Kahn

Keyword(s):

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Faculty Opinions recommendation of Micromechanical analysis of the binding of DNA-bending proteins HMGB1, NHP6A, and HU reveals their ability to form highly stable DNA-protein complexes.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1022149.250715 ◽

2004 ◽

Author(s):

Jim Maher

Keyword(s):

Protein Complexes ◽

Dna Bending ◽

Micromechanical Analysis

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Faculty Opinions recommendation of Structural and energetic origins of sequence-specific DNA bending: Monte Carlo simulations of papillomavirus E2-DNA binding sites.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1030163.358422 ◽

2006 ◽

Author(s):

Martin Egli

Keyword(s):

Monte Carlo ◽

Dna Binding ◽

Monte Carlo Simulations ◽

Binding Sites ◽

Dna Bending ◽

Dna Binding Sites

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Faculty Opinions recommendation of Protein-induced DNA bending clarifies the architectural organization of the sigma54-dependent glnAp2 promoter.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1030625.358719 ◽

2006 ◽

Author(s):

Stephen Busby

Keyword(s):

Dna Bending ◽

Architectural Organization

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Retinoblastoma protein reverses DNA bending by transcription factor E2F.

Journal of Biological Chemistry ◽

10.1016/s0021-9258(17)37473-2 ◽

1994 ◽

Vol 269 (9) ◽

pp. 6999-7005 ◽

Author(s):

H.E. Huber ◽

P.J. Goodhart ◽

P.S. Huang

Keyword(s):

Transcription Factor ◽

Dna Bending ◽

Retinoblastoma Protein ◽

Transcription Factor E2f

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Determinants of DNA Bending in the DNA−Cyclic AMP Receptor Protein Complexes inEscherichia coli†

Biochemistry ◽

10.1021/bi027259+ ◽

2003 ◽

Vol 42 (17) ◽

pp. 4809-4818 ◽

Author(s):

Shwu-Hwa Lin ◽

J. Ching Lee

Keyword(s):

Protein Complexes ◽

Dna Bending ◽

Receptor Protein ◽

Inescherichia Coli ◽

Cyclic Amp Receptor Protein

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Design and Construction of a DNA Nanostructure for Direct and Dynamic Measurement of DNA Bending by DNA-Binding Proteins

Biophysical Journal ◽

10.1016/j.bpj.2009.12.3629 ◽

2010 ◽

Vol 98 (3) ◽

pp. 661a

Author(s):

Daniel Schiffels ◽

Joachim Rädler ◽

D. Kuchnir Fygenson

Keyword(s):

Dna Binding ◽

Binding Proteins ◽

Dna Bending ◽

Dynamic Measurement ◽

Dna Binding Proteins ◽

Dna Nanostructure ◽

Design And Construction

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DNA Sequence-dependent Differences in TATA-binding Protein-induced DNA Bending in Solution Are Highly Sensitive to Osmolytes

Journal of Biological Chemistry ◽

10.1074/jbc.m004401200 ◽

2001 ◽

Vol 276 (18) ◽

pp. 14623-14627 ◽

Author(s):

Jiong Wu ◽

Kay M. Parkhurst ◽

Robyn M. Powell ◽

Lawrence J. Parkhurst

Keyword(s):

Dna Sequence ◽

Binding Protein ◽

Dna Bending ◽

Tata Binding Protein ◽

Sequence Dependent ◽

Highly Sensitive

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Structure of a Tethered Cationic 3-Aminopropyl Chain Incorporated into an Oligodeoxynucleotide: Evidence for 3‘-Orientation in the Major Groove Accompanied by DNA Bending

Journal of the American Chemical Society ◽

10.1021/ja0201707 ◽

2002 ◽

Vol 124 (29) ◽

pp. 8553-8560 ◽

Author(s):

Zhijun Li ◽

Li Huang ◽

Prasad Dande ◽

Barry Gold ◽

Michael P. Stone

Keyword(s):

Dna Bending ◽

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P53 Induced Dna Bending

Biophysical Journal ◽

10.1016/j.bpj.2008.12.3018 ◽

2009 ◽

Vol 96 (3) ◽

pp. 577a

Author(s):

Ruth Nussinov ◽

Yongping Pan

Keyword(s):

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DNA bending by the a1 and α2 homeodomain proteins from yeast

Nucleic Acids Research ◽

10.1093/nar/23.7.1239 ◽

1995 ◽

Vol 23 (7) ◽

pp. 1239-1243 ◽

Author(s):

Dana L. Smith ◽

Arshad B. Desai ◽

Alexander D. Johnson

Keyword(s):

Dna Bending ◽

Homeodomain Proteins

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