A Review of Cloud Computing Bioinformatics Solutions for Next-Gen Sequencing Data Analysis and Research

Author(s):  
Konstantinos Krampis ◽  
Claudia Wultsch

Abstract Research in biology has entered a digital era, where next-generation sequencing instruments generate multiple terabytes of data but are equipped with minimal computational and storage capacity that is not sufficient for large-scale, post-sequencing data analysis. Therefore, scientific value cannot be obtained from investment in a sequencing instrument, unless it is also combined with a significant expense for informatics infrastructure. An alternative option for laboratories is to outsource their informatics infrastructure, by leasing computational cycles and storage capacity from cloud computing services. Development of cloud-based bioinformatics tool suites can provide users with access to pre-configured software and on-demand computing resources for genomic data analysis, while at the same time lower the barrier for working with sequencing datasets, leading to broader adoption of genomic technologies for basic biological research. We conclude that along with the democratization of genome sequencing through the availability of lowcost, bench-top sequencers, cloud computing can in turn democratize access to computational capacity and informatics infrastructures required for sequencing data analysis.

BMC Genomics ◽  
2013 ◽  
Vol 14 (1) ◽  
pp. 425 ◽  
Author(s):  
Shanrong Zhao ◽  
Kurt Prenger ◽  
Lance Smith ◽  
Thomas Messina ◽  
Hongtao Fan ◽  
...  

2015 ◽  
Vol 37 (6) ◽  
pp. 489-501 ◽  
Author(s):  
Taesoo Kwon ◽  
Won Gi Yoo ◽  
Won-Ja Lee ◽  
Won Kim ◽  
Dae-Won Kim

2011 ◽  
Vol 1 (1) ◽  
pp. 23-27
Author(s):  
Akanksha Akanksha ◽  
Dr. Gurdev Singh

With the increasing prevalence and demand of large scale cloudcomputing environment, a researcher has to draw more attentiontowards the services provided by the CLOUD. As the access tothe server is increasing, centralized and distributed computingarchitecture will produce bottlenecks data which affect thequality of cloud computing services and bring the huge supportto users. In this paper we are going to propose certain vitalaspects such as memory utilization, storage capacity to check theefficiency and performance of various clouds in cloudcomputing environment. This is based upon the static data. Theproposed mechanism enables users to access memories invarious systems depending on the predefined criteria. Selectionmethod for accessing the memory of a resource is properlyintroduced in this paper. Our evaluation results show that theaggregation of various clouds is effective in indicating the betterefficiency and also to reduce network traffic sent over cloudnetworks.


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