Fixed Bin Population Data for the VNTR Loci D1S7, D2S44, D4S139, D5S110, D10S28, and D14S13 in a Population Sample from Rio De Janeiro, Brazil

1997 ◽  
Vol 42 (5) ◽  
pp. 14233J ◽  
Author(s):  
Rodrigo S. Moura-Neto ◽  
Bruce Budowle
Genetics ◽  
2003 ◽  
Vol 165 (4) ◽  
pp. 2213-2233 ◽  
Author(s):  
Na Li ◽  
Matthew Stephens

AbstractWe introduce a new statistical model for patterns of linkage disequilibrium (LD) among multiple SNPs in a population sample. The model overcomes limitations of existing approaches to understanding, summarizing, and interpreting LD by (i) relating patterns of LD directly to the underlying recombination process; (ii) considering all loci simultaneously, rather than pairwise; (iii) avoiding the assumption that LD necessarily has a “block-like” structure; and (iv) being computationally tractable for huge genomic regions (up to complete chromosomes). We examine in detail one natural application of the model: estimation of underlying recombination rates from population data. Using simulation, we show that in the case where recombination is assumed constant across the region of interest, recombination rate estimates based on our model are competitive with the very best of current available methods. More importantly, we demonstrate, on real and simulated data, the potential of the model to help identify and quantify fine-scale variation in recombination rate from population data. We also outline how the model could be useful in other contexts, such as in the development of more efficient haplotype-based methods for LD mapping.


2009 ◽  
Vol 32 (2) ◽  
pp. 255-259 ◽  
Author(s):  
Priscila Falagan-Lotsch ◽  
Marina S. Rodrigues ◽  
Viviane Esteves ◽  
Roberto Vieira ◽  
Luis C. Amendola ◽  
...  

2009 ◽  
Vol 11 (1) ◽  
pp. 37-40 ◽  
Author(s):  
Andrea Verzeletti ◽  
Nicoletta Cerri ◽  
Fausta Gasparini ◽  
Anna Poglio ◽  
Elena Mazzeo ◽  
...  

Genetics ◽  
2000 ◽  
Vol 156 (3) ◽  
pp. 1393-1401 ◽  
Author(s):  
Mary K Kuhner ◽  
Jon Yamato ◽  
Joseph Felsenstein

AbstractWe describe a method for co-estimating r = C/μ (where C is the per-site recombination rate and μ is the per-site neutral mutation rate) and Θ = 4Neμ (where Ne is the effective population size) from a population sample of molecular data. The technique is Metropolis-Hastings sampling: we explore a large number of possible reconstructions of the recombinant genealogy, weighting according to their posterior probability with regard to the data and working values of the parameters. Different relative rates of recombination at different locations can be accommodated if they are known from external evidence, but the algorithm cannot itself estimate rate differences. The estimates of Θ are accurate and apparently unbiased for a wide range of parameter values. However, when both Θ and r are relatively low, very long sequences are needed to estimate r accurately, and the estimates tend to be biased upward. We apply this method to data from the human lipoprotein lipase locus.


Circulation ◽  
2007 ◽  
Vol 116 (suppl_16) ◽  
Author(s):  
Ernst Rietzschel ◽  
Marc De Buyzere ◽  
Dirk De Baquer ◽  
Sofie Bekaert ◽  
Patrick Segers ◽  
...  

Purpose: Combination therapy with the female hormones estrogen (E) and progestins are very frequently used with approximately 100 million women worldwide taking oral contraceptives (OC). Recent trials have cast doubt on the cardiovascular safety of hormonal replacement therapy (HRT). In contrast to the HRT-controversy, little attention has been focused on OC, a therapy using 10 –100 fold higher levels of E than HRT. We describe population correlates of long-term OC use. Methods: The Asklepios study is a representative sample (2524 M/F volunteers, 35–55 years) from the Belgian general population free from overt cardiovascular disease. Vascular echography of the carotid and femoral arteries was systematically performed and atherosclerosis was defined by presence of carotid or femoral plaque. Results: Of 1301 women (median age 45.7 y), 27.4% were taking OC and 10.0% were taking HRT. In contrast, past OC-use is far more prevalent: 81% of women having taken OC for at least 1 year, with a median exposition of 13 years. After multivariate adjustment for age, smoking, blood pressure, lipids, obesity, diabetes, physical activity, fruit, vegetable and alcohol intake, educational level and drug therapy (lipid-lowering, antihypertensive, aspirin), use of OC was associated with a significant increase in carotid or femoral unilateral plaque. Odds ratio’s (OR) per 10 years of OC exposure were: carotid plaque 1.17 (1.00 –1.33) and femoral plaque 1.28 (1.10 –1.47). We also looked at prevalence of bilateral disease (involvement of right and left carotid/femoral artery) as a more stringent phenotype of atherosclerosis. OR per 10 years OC exposure were: carotid plaque 1.42 (1.03–1.84); femoral plaque 1.34 (1.05–1.63). Interpretation : Use of contraceptive therapy is very common and associated with an unexpected increase in the prevalence of carotid and femoral atherosclerosis in otherwise young, apparently healthy women. Our data suggest a 20 –30% increased prevalence of plaque in the carotid and femoral arteries per 10 years of OC exposure. In the light of widespread (>80% of our population sample; > 100 million women globally) and usually prolonged OC use (>10 years) these results suggest OC use could be an important factor in the global atherosclerotic burden.


2004 ◽  
Vol 1261 ◽  
pp. 210-212 ◽  
Author(s):  
N Cerri ◽  
S Manzoni ◽  
A Verzeletti ◽  
F De Ferrari

2006 ◽  
Vol 1288 ◽  
pp. 286-288 ◽  
Author(s):  
N. Cerri ◽  
A. Verzeletti ◽  
F. Gasparini ◽  
B. Bandera ◽  
F. De Ferrari

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